RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 TULP2O00295 520 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 MAP3K6O95382 1288 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 GAS8O95995 478 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 ATF2P15336 505 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 HOXA11P31270 313 aaPredicted RBP12.12□□□□□ -0.47
CUX1-202ENST00000292538 ADCY1Q08828 1119 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 CCDC38Q502W7 563 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 RAB6CQ53S08 254 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 LRRC31Q6UY01 552 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 RNF169Q8NCN4 708 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 VCPIP1Q96JH7 1222 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 MRPL45Q9BRJ2 306 aaKnown RBP12.12□□□□□ -0.47
CUX1-202ENST00000292538 DDX23Q9BUQ8 820 aaKnown RBP12.12□□□□□ -0.47
CUX1-202ENST00000292538 DCLK3Q9C098 648 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 RAB6CQ9H0N0 254 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 ZDHHC18Q9NUE0 388 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 SLC15A5A6NIM6 579 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 GOLGA8MH3BSY2 632 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 RECQL4O94761 1208 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 PGK1P00558 417 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 EIF4BP23588 611 aaKnown RBP12.12□□□□□ -0.47
CUX1-202ENST00000292538 ADORA2BP29275 332 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 CHKAP35790 457 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 IRAK1P51617 712 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 ITGA8P53708 1063 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 MYO1EQ12965 1108 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 MTMR3Q13615 1198 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 TWF2Q6IBS0 349 aaKnown RBP12.12□□□□□ -0.47
CUX1-202ENST00000292538 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.12□□□□□ -0.476e-12■■■■■ 49.8
CUX1-202ENST00000292538 UBR7Q8N806 425 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 BCAS4Q8TDM0 211 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 LRRN4Q8WUT4 740 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 KAT2BQ92831 832 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 PIWIL1Q96J94 861 aaKnown RBP12.12□□□□□ -0.47
CUX1-202ENST00000292538 ASB7Q9H672 318 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 TSPAN16Q9UKR8 245 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 DNPEPQ9ULA0 475 aa12.12□□□□□ -0.47
CUX1-202ENST00000292538 ABT1Q9ULW3 272 aaKnown RBP12.12□□□□□ -0.47
CUX1-202ENST00000292538 CAND2O75155 1236 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 CILPO75339 1184 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 ITGBL1O95965 494 aaPredicted RBP12.11□□□□□ -0.47
CUX1-202ENST00000292538 GNASQ5JWF2 1037 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 SCUBE3Q8IX30 993 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 MREGQ8N565 214 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 GLIS1Q8NBF1 620 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 ZIC5Q96T25 663 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 TMEM121Q9BTD3 319 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 ADAM33Q9BZ11 813 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 ANAPC5Q9UJX4 755 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 ZNFX1Q9P2E3 1918 aaKnown RBP12.11□□□□□ -0.47
CUX1-202ENST00000292538 RBM47A0AV96 593 aaKnown RBP12.11□□□□□ -0.47
CUX1-202ENST00000292538 FOXO6A8MYZ6 492 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 E5RJQ4 531 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 SGK1O00141 431 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 PSTPIP1O43586 416 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 LSM8O95777 96 aaKnown RBP12.11□□□□□ -0.47
CUX1-202ENST00000292538 CD48P09326 243 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 FKBP1BP68106 108 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 C15orf59Q2T9L4 293 aaPredicted RBP12.11□□□□□ -0.47
CUX1-202ENST00000292538 NOTUMQ6P988 496 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 CXCL17Q6UXB2 119 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 ZNF467Q7Z7K2 595 aaPredicted RBP12.11□□□□□ -0.47
CUX1-202ENST00000292538 LINC01465Q8N7H1 131 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 KCTD6Q8NC69 237 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 ATL2Q8NHH9 583 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 EMID1Q96A84 441 aaPredicted RBP12.11□□□□□ -0.47
CUX1-202ENST00000292538 SELENOSQ9BQE4 189 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 LRRC19Q9H756 370 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 SLC45A1Q9Y2W3 748 aa12.11□□□□□ -0.47
CUX1-202ENST00000292538 A8MXQ7 604 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 IL1R2P27930 398 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 FNTAP49354 379 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 SEC24CP53992 1094 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 GOLGA7BQ2TAP0 167 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 ZNF618Q5T7W0 954 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 PPP1R26Q5T8A7 1209 aaPredicted RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 CYP4F22Q6NT55 531 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 SLC27A1Q6PCB7 646 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 CCDC33Q8N5R6 958 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 C3orf20Q8ND61 904 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 MDM1Q8TC05 714 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 EPS8L3Q8TE67 593 aaKnown RBP12.1□□□□□ -0.47
CUX1-202ENST00000292538 NT5C1AQ9BXI3 368 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 B3GNT5Q9BYG0 378 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 NFKBIZQ9BYH8 718 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 ADAMTS10Q9H324 1103 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 DPEP3Q9H4B8 488 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 TMBIM4Q9HC24 238 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 TBK1Q9UHD2 729 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 NRCAMQ92823 1304 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 DOCK3Q8IZD9 2030 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 MYADML2A6NDP7 307 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 RRN3P2A6NIE6 340 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 H0YGN5 161 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 GPR32O75388 356 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 CCT5P48643 541 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 PSEN2P49810 448 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 KYNUQ16719 465 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 FAM187BQ17R55 369 aa12.1□□□□□ -0.47
CUX1-202ENST00000292538 P3H1Q32P28 736 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms