RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 HOXB8P17481 243 aaPredicted RBP13.61□□□□□ -0.23
SS18-202ENST00000269138 INCA1Q0VD86 236 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 KCNMA1Q12791 1236 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 EXOC3L4Q17RC7 722 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 LEXMQ3ZCV2 418 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 MDH1BQ5I0G3 518 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 PPM1LQ5SGD2 360 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 LIN9Q5TKA1 542 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 DPY19L2P1Q6NXN4 242 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 TRIM65Q6PJ69 517 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 ACOT1Q86TX2 421 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 PPM1KQ8N3J5 372 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 ZNF707Q96C28 371 aaPredicted RBP13.61□□□□□ -0.23
SS18-202ENST00000269138 RHOBTB2Q9BYZ6 727 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 ELOVL4Q9GZR5 314 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 SFXN1Q9H9B4 322 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 SIX2Q9NPC8 291 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 CISHQ9NSE2 258 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 ABI2Q9NYB9 513 aaPredicted RBP13.61□□□□□ -0.23
SS18-202ENST00000269138 THEGQ9P2T0 379 aa13.61□□□□□ -0.23
SS18-202ENST00000269138 CILPO75339 1184 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 CAVIN2O95810 425 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 KCNQ1P51787 676 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 ZNF445P59923 1031 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 ZNF394Q53GI3 561 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 CCDC149Q6ZUS6 474 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 UBR7Q8N806 425 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 B3GALNT2Q8NCR0 500 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 SMRP1Q8NCR6 262 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 MYCBPAPQ8TBZ2 947 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 FAM200AQ8TCP9 573 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 MYLPFQ96A32 169 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 FAXDC2Q96IV6 333 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 KREMEN1Q96MU8 473 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 UBE2TQ9NPD8 197 aaPredicted RBP13.6□□□□□ -0.23
SS18-202ENST00000269138 DPP7Q9UHL4 492 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 PCDHB5Q9Y5E4 795 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 INSL5Q9Y5Q6 135 aa13.6□□□□□ -0.23
SS18-202ENST00000269138 CLDN5O00501 218 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 MBTPS2O43462 519 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 ACO1P21399 889 aaKnown RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 CYP2F1P24903 491 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 GPR15P49685 360 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 KLK7P49862 253 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 NFE2Q16621 373 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 UVSSAQ2YD98 709 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 ELMSAN1Q6PJG2 1045 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 GPR149Q86SP6 731 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 UNC93AQ86WB7 457 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 CRYBG2Q8N1P7 616 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 C12orf29Q8N999 325 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 ANKRD20A12PQ8NF67 263 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 CMASQ8NFW8 434 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 PCED1BQ96HM7 432 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 NT5C1AQ9BXI3 368 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 B3GNT5Q9BYG0 378 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 PRKD2Q9BZL6 878 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 ADAM7Q9H2U9 754 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 ZDHHC7Q9NXF8 308 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 AJAP1Q9UKB5 411 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 MAFFQ9ULX9 164 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 USP15Q9Y4E8 981 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 YIPF1Q9Y548 306 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 LGALS16A8MUM7 142 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 PAPLNO95428 1278 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 TPM2P07951 284 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 HAPLN1P10915 354 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 TBXAS1P24557 533 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 RAD23BP54727 409 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 CYP27A1Q02318 531 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 TWF1Q12792 350 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 SMARCB1Q12824 385 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 SMAD4Q13485 552 aaKnown RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 PTPN21Q16825 1174 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 MGAT5BQ3V5L5 792 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 SDHAF4Q5VUM1 108 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 PTCRAQ6ISU1 281 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 PAQR9Q6ZVX9 377 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 SPATA2LQ8IUW3 424 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 SLC4A11Q8NBS3 891 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 RNF214Q8ND24 703 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 SPPL2BQ8TCT7 592 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 C2orf15Q8WU43 125 aaKnown RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 SMG7Q92540 1137 aaKnown RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 TNIP3Q96KP6 325 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 NAP1L5Q96NT1 182 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 SEPT5Q99719 369 aaPredicted RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 LSM14BQ9BX40 385 aaKnown RBP13.59□□□□□ -0.23
SS18-202ENST00000269138 HCFC1R1Q9NWW0 138 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 CEP72Q9P209 647 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 PCDHB4Q9Y5E5 795 aa13.59□□□□□ -0.23
SS18-202ENST00000269138 RNF225M0QZC1 329 aaPredicted RBP13.58□□□□□ -0.24
SS18-202ENST00000269138 TEX33O43247 280 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 CALCAP01258 141 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 HNRNPA1P09651 372 aaKnown RBP eCLIP13.58□□□□□ -0.24
SS18-202ENST00000269138 CCDC130P13994 396 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 BDNFP23560 247 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 HOXA9P31269 272 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 CACNA2D1P54289 1103 aa13.58□□□□□ -0.24
SS18-202ENST00000269138 NTHL1P78549 312 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms