RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CLMNQ96JQ2 1002 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 ZNF558Q96NG5 402 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 NAT9Q9BTE0 207 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 TLL2Q9Y6L7 1015 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 SPATA31C1P0DKV0 1188 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 OVOS1Q6IE37 1185 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 CCDC137Q6PK04 289 aaKnown RBP14.31□□□□□ -0.12
LDLR-201ENST00000252444 SERPINB11Q96P15 392 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 ASTN2O75129 1339 aaPredicted RBP14.31□□□□□ -0.12
LDLR-201ENST00000252444 PJA2O43164 708 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 SELPP16109 830 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 LAG3P18627 525 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 OAS2P29728 719 aaKnown RBP14.31□□□□□ -0.12
LDLR-201ENST00000252444 HTR7P34969 479 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 FXR1P51114 621 aaKnown RBP eCLIP14.31□□□□□ -0.12
LDLR-201ENST00000252444 GRB14Q14449 540 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 C2orf15Q8WU43 125 aaKnown RBP14.31□□□□□ -0.12
LDLR-201ENST00000252444 HHIPL1Q96JK4 782 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 ZNF214Q9UL59 606 aaPredicted RBP14.31□□□□□ -0.12
LDLR-201ENST00000252444 IGLV3-22A0A075B6J6 115 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 WTIPA6NIX2 430 aaPredicted RBP14.31□□□□□ -0.12
LDLR-201ENST00000252444 PHF20L1A8MW92 1017 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 B3GAT3O94766 335 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 PSMC6P62333 389 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 LRRC43Q8N309 656 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 MCEEQ96PE7 176 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 SEPT5Q99719 369 aaPredicted RBP14.31□□□□□ -0.12
LDLR-201ENST00000252444 SQORQ9Y6N5 450 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 EIF3HO15372 352 aaKnown RBP eCLIP14.3□□□□□ -0.12
LDLR-201ENST00000252444 KLRC4O43908 158 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 B4GALT4O60513 344 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 PFKMP08237 780 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 ARL2P36404 184 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 GEMP55040 296 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 TMEM62Q0P6H9 643 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 NAPEPLDQ6IQ20 393 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 C17orf53Q8N3J3 647 aaPredicted RBP14.3□□□□□ -0.12
LDLR-201ENST00000252444 ANGPTL3Q9Y5C1 460 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 PCDHAC2Q9Y5I4 1007 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 HACD1B0YJ81 288 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 CREB3O43889 395 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 NME3Q13232 169 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 SNX1Q13596 522 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 LMBRD2Q68DH5 695 aaPredicted RBP14.3□□□□□ -0.12
LDLR-201ENST00000252444 ZNF384Q8TF68 577 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 ZSWIM1Q9BR11 485 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 ZNF510Q9Y2H8 683 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 PROSCO94903 275 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 MYH13Q9UKX3 1938 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 SLC9A3R1O14745 358 aaPredicted RBP14.3□□□□□ -0.12
LDLR-201ENST00000252444 CCT5P48643 541 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 MEA1Q16626 185 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 DCAF6Q58WW2 860 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 GKAP1Q5VSY0 366 aaPredicted RBP14.3□□□□□ -0.12
LDLR-201ENST00000252444 LRRC38Q5VT99 294 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 TPCN2Q8NHX9 752 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 CABS1Q96KC9 395 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 RRAGDQ9NQL2 400 aaPredicted RBP14.3□□□□□ -0.12
LDLR-201ENST00000252444 MSRAQ9UJ68 235 aa14.3□□□□□ -0.12
LDLR-201ENST00000252444 FLT3LGP49771 235 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 CAPSQ13938 189 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 RASAL3Q86YV0 1011 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 TTC8Q8TAM2 541 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 DUSP9Q99956 384 aaKnown RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 DHX33Q9H6R0 707 aaKnown RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 THG1LQ9NWX6 298 aaKnown RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 LRRIQ3A6PVS8 624 aaPredicted RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 F5H5T6 163 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 PPP1R11O60927 126 aaPredicted RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 GLI1P08151 1106 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 HDAC4P56524 1084 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 ITGB3BPQ13352 177 aaPredicted RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 RAPH1Q70E73 1250 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 CYFIP2Q96F07 1278 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 CAPS2Q9BXY5 557 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 ROPN1BQ9BZX4 212 aaPredicted RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 ROPN1Q9HAT0 212 aaPredicted RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 ENTPD7Q9NQZ7 604 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 COMMD8Q9NX08 183 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.29□□□□□ -0.126e-7■□□□□ 10.2
LDLR-201ENST00000252444 POLIQ9UNA4 740 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 PIGRP01833 764 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 NR2C2P49116 596 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 VPS41P49754 854 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 CCDC6Q16204 474 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 CACNA2D3Q8IZS8 1091 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 CYP2W1Q8TAV3 490 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 FBXO32Q969P5 355 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 AAR2Q9Y312 384 aaKnown RBP14.29□□□□□ -0.12
LDLR-201ENST00000252444 SUN1O94901 812 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 CXCL8P10145 99 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 NCAPHQ15003 741 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 BBS9Q3SYG4 887 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 ARAP2Q8WZ64 1704 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 OSBPL8Q9BZF1 889 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 ZMYND15Q9H091 742 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 SNTG2Q9NY99 539 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 MYH2Q9UKX2 1941 aa14.29□□□□□ -0.12
LDLR-201ENST00000252444 LACTBL1A8MY62 500 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 EOMESO95936 686 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms