RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	HUG1	Q6Q5K6	68 aa		3.08	□□□□□ -1.92
UBX5	YDR330W	IRA2	P19158	3079 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	IMP1	P28627	190 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	SLM6	P38343	150 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	PRS3	P38689	320 aa	Known RBP	3.07	□□□□□ -1.92
UBX5	YDR330W	IKI1	P38874	309 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	PET8	P38921	284 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	FLX1	P40464	311 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	SNO1	Q03144	224 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	ADD37	Q03233	198 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	YMR279C	Q03263	540 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	TSA2	Q04120	196 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	GMC1	Q04399	608 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	YDR115W	Q04598	105 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	YPR098C	Q06089	161 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	RAF1	Q06891	181 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	YOL029C	Q08187	201 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	RRS1	Q08746	203 aa	Known RBP	3.07	□□□□□ -1.92
UBX5	YDR330W	YOR192C-C	Q3E736	78 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	COA2	Q3E823	68 aa		3.07	□□□□□ -1.92
UBX5	YDR330W	SPT4	P32914	102 aa	Predicted RBP	3.06	□□□□□ -1.92
UBX5	YDR330W	POG1	P40473	351 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	SIP18	P50263	79 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	YNR066C	P53752	436 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	TMA23	Q03525	211 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	YMR090W	Q04304	227 aa	Known RBP	3.06	□□□□□ -1.92
UBX5	YDR330W	FIT1	Q04433	528 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	YMR253C	Q04835	414 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	UPS1	Q05776	175 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	YPD1	Q07688	167 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	PAM18	Q07914	168 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	YOL118C	Q08259	102 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	YOR292C	Q08743	309 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	ATG40	Q99325	256 aa		3.06	□□□□□ -1.92
UBX5	YDR330W	RPL35A	P0CX84	120 aa	Known RBP	3.05	□□□□□ -1.92
UBX5	YDR330W	RPL35B	P0CX85	120 aa	Known RBP	3.05	□□□□□ -1.92
UBX5	YDR330W	YCR025C	P25352	136 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	IES6	P32617	166 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	CLB6	P32943	380 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	YKL187C	P34231	750 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	PRS4	P38063	326 aa	Predicted RBP	3.05	□□□□□ -1.92
UBX5	YDR330W	GPI18	P38211	433 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	PGD1	P40356	397 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	PHB1	P40961	287 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	ERG25	P53045	309 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	YDC1	Q02896	317 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	MRX11	Q03079	207 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	ATG5	Q12380	294 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	AGC1	Q12482	902 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	FOL3	Q12676	427 aa	Predicted RBP	3.05	□□□□□ -1.92
UBX5	YDR330W	IRA1	P18963	3092 aa		3.05	□□□□□ -1.92
UBX5	YDR330W	YDR157W	A0A023PZE8	133 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	YOX1	P34161	385 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	UPS2	P35200	230 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	YBR292C	P38357	123 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	SDS23	P53172	527 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	YGR026W	P53217	278 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	TIM21	P53220	239 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	RIM9	Q04734	239 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	DPP1	Q05521	289 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	CTR3	Q06686	241 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	PRP11	Q07350	266 aa	Predicted RBP	3.04	□□□□□ -1.92
UBX5	YDR330W	YOL024W	Q08172	172 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	ZEO1	Q08245	113 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	YPL264C	Q08980	353 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	YOR015W	Q12169	119 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	PRR2	Q12310	699 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	DGK1	Q12382	290 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	YPR145C-A	Q2V2P0	78 aa		3.04	□□□□□ -1.92
UBX5	YDR330W	IPP1	P00817	287 aa	Known RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	ATG8	P38182	117 aa	RIP-Chip data	3.03	□□□□□ -1.92	not detected
UBX5	YDR330W	YER085C	P40058	173 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	GTT1	P40582	234 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	GON7	P46984	123 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	PDR17	P53844	350 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	HSK3	P69852	69 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	RPL21A	Q02753	160 aa	Known RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	HRD1	Q08109	551 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	YOR029W	Q12243	111 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	ADH3	P07246	375 aa	Known RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	POF1	P25576	258 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	AHT1	P29589	182 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	YEL045C	P32616	141 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	RPL14A	P36105	138 aa	Known RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	RPL14B	P38754	138 aa	Known RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	SEN34	P39707	275 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	RMD6	P39975	231 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	NSE4	P43124	402 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	SMD3	P43321	101 aa	Known RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	MOG1	P47123	218 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	XPT1	P47165	209 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	DAN1	P47178	298 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	GEP7	P53171	287 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	YGR050C	P53231	118 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	YPL067C	Q02754	198 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	API2	Q04413	109 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	YLR179C	Q06252	201 aa	Known RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	YPL278C	Q08990	100 aa		3.03	□□□□□ -1.92
UBX5	YDR330W	SNU23	Q12368	194 aa	Predicted RBP	3.03	□□□□□ -1.92
UBX5	YDR330W	BOL1	Q3E793	110 aa		3.03	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms