RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C ROM2P51862 1356 aaKnown RBP0.1□□□□□ -2.39
SNU56YDR240C RPL43AP0CX25 92 aaKnown RBP0.1□□□□□ -2.39
SNU56YDR240C RPL43BP0CX26 92 aa0.1□□□□□ -2.39
SNU56YDR240C TRX3P25372 127 aa0.1□□□□□ -2.39
SNU56YDR240C CAF4P36130 643 aa0.1□□□□□ -2.39
SNU56YDR240C YEL073CP39974 107 aa0.1□□□□□ -2.39
SNU56YDR240C RFC2P40348 353 aa0.1□□□□□ -2.39
SNU56YDR240C CCC1P47818 322 aa0.1□□□□□ -2.39
SNU56YDR240C SHH4Q06236 168 aa0.1□□□□□ -2.39
SNU56YDR240C NOC4Q06512 552 aaPredicted RBP0.1□□□□□ -2.39
SNU56YDR240C TAF2P23255 1407 aa0.1□□□□□ -2.39
SNU56YDR240C RAD9P14737 1309 aa0.1□□□□□ -2.39
SNU56YDR240C JIP3O13555 125 aa0.1□□□□□ -2.39
SNU56YDR240C YMR141CP40211 102 aa0.1□□□□□ -2.39
SNU56YDR240C GLC8P41818 229 aa0.1□□□□□ -2.39
SNU56YDR240C RAD6P06104 172 aa0.09□□□□□ -2.4
SNU56YDR240C RPS22AP0C0W1 130 aaKnown RBP0.09□□□□□ -2.4
SNU56YDR240C YKL102CP34249 101 aa0.09□□□□□ -2.4
SNU56YDR240C GEP7P53171 287 aa0.09□□□□□ -2.4
SNU56YDR240C TIM13P53299 105 aa0.09□□□□□ -2.4
SNU56YDR240C MGR2Q02889 113 aa0.09□□□□□ -2.4
SNU56YDR240C RPS22BQ3E7Y3 130 aaKnown RBP0.09□□□□□ -2.4
SNU56YDR240C SPS2P08459 502 aa0.08□□□□□ -2.4
SNU56YDR240C YBR027CP38220 110 aa0.08□□□□□ -2.4
SNU56YDR240C YNL122CP53921 115 aaPredicted RBP0.08□□□□□ -2.4
SNU56YDR240C HPT1Q04178 221 aaKnown RBP0.08□□□□□ -2.4
SNU56YDR240C HRD1Q08109 551 aa0.08□□□□□ -2.4
SNU56YDR240C YLR307C-AQ3E825 87 aa0.08□□□□□ -2.4
SNU56YDR240C HAP2P06774 265 aa0.07□□□□□ -2.4
SNU56YDR240C TTI2P47168 421 aa0.07□□□□□ -2.4
SNU56YDR240C NUF2P33895 451 aa0.06□□□□□ -2.4
SNU56YDR240C CPR5P35176 225 aa0.06□□□□□ -2.4
SNU56YDR240C SHG1P38337 142 aa0.06□□□□□ -2.4
SNU56YDR240C GLR1P41921 483 aaKnown RBP0.06□□□□□ -2.4
SNU56YDR240C HOP2P53187 214 aa0.06□□□□□ -2.4
SNU56YDR240C BRX1Q08235 291 aaKnown RBP0.06□□□□□ -2.4
SNU56YDR240C TRM3Q07527 1436 aa0.05□□□□□ -2.4
SNU56YDR240C YKT6P36015 200 aaKnown RBP0.05□□□□□ -2.4
SNU56YDR240C XPT1P47165 209 aa0.05□□□□□ -2.4
SNU56YDR240C SEN15Q04675 128 aa0.05□□□□□ -2.4
SNU56YDR240C GRX8Q05926 109 aa0.05□□□□□ -2.4
SNU56YDR240C SPT14P32363 452 aa0.04□□□□□ -2.4
SNU56YDR240C CGR1P53188 120 aa0.04□□□□□ -2.4
SNU56YDR240C NVJ1P38881 321 aa0.03□□□□□ -2.4
SNU56YDR240C URA2P07259 2214 aaKnown RBP0.03□□□□□ -2.4
SNU56YDR240C YLR157W-EP0CF00 54 aa0.03□□□□□ -2.41
SNU56YDR240C INO4P13902 151 aa0.03□□□□□ -2.41
SNU56YDR240C ATG8P38182 117 aaRIP-Chip data0.03□□□□□ -2.41not detected
SNU56YDR240C SOL1P50278 321 aa0.03□□□□□ -2.41
SNU56YDR240C TIM11P81449 96 aaPredicted RBP0.03□□□□□ -2.41
SNU56YDR240C SYM1Q06563 197 aa0.03□□□□□ -2.41
SNU56YDR240C TAO3P40468 2376 aa0.02□□□□□ -2.41
SNU56YDR240C APA2P22108 325 aa0.02□□□□□ -2.41
SNU56YDR240C YKR041WP36134 250 aa0.02□□□□□ -2.41
SNU56YDR240C HTD2P38790 280 aaKnown RBP0.02□□□□□ -2.41
SNU56YDR240C YHR140WP38842 239 aa0.02□□□□□ -2.41
SNU56YDR240C LIP1Q03579 150 aa0.02□□□□□ -2.41
SNU56YDR240C HYP2P23301 157 aaKnown RBP0.01□□□□□ -2.41
SNU56YDR240C ECM31P38122 312 aa0.01□□□□□ -2.41
SNU56YDR240C ATG10Q07879 167 aa0.01□□□□□ -2.41
SNU56YDR240C UIP4Q08926 304 aa0.01□□□□□ -2.41
SNU56YDR240C CSH1P38287 376 aa0□□□□□ -2.41
SNU56YDR240C YEL028WP39989 153 aa0□□□□□ -2.41
SNU56YDR240C YEL014CP39999 101 aa0□□□□□ -2.41
SNU56YDR240C JAC1P53193 184 aa0□□□□□ -2.41
SNU56YDR240C YET3Q07451 203 aa0□□□□□ -2.41
SNU56YDR240C RIB3Q99258 208 aa0□□□□□ -2.41
SNU56YDR240C RPS29BP41058 56 aaKnown RBP-0.01□□□□□ -2.41
SNU56YDR240C YJL009WP47078 108 aa-0.01□□□□□ -2.41
SNU56YDR240C SNO1Q03144 224 aa-0.01□□□□□ -2.41
SNU56YDR240C IRC21Q04772 201 aa-0.01□□□□□ -2.41
SNU56YDR240C YMR321CQ04898 105 aa-0.01□□□□□ -2.41
SNU56YDR240C YDL241WQ07738 123 aa-0.01□□□□□ -2.41
SNU56YDR240C CMC4Q3E7A9 73 aa-0.01□□□□□ -2.41
SNU56YDR240C COA6Q3E846 104 aa-0.01□□□□□ -2.41
SNU56YDR240C PHO13P19881 312 aa-0.02□□□□□ -2.41
SNU56YDR240C HSP150P32478 413 aa-0.03□□□□□ -2.41
SNU56YDR240C UBC6P33296 250 aaPredicted RBP-0.03□□□□□ -2.41
SNU56YDR240C GRE1Q08969 168 aa-0.03□□□□□ -2.41
SNU56YDR240C BNI1P41832 1953 aa-0.03□□□□□ -2.41
SNU56YDR240C SRP102P36057 244 aaPredicted RBP-0.03□□□□□ -2.41
SNU56YDR240C YPT31P38555 223 aaKnown RBP-0.03□□□□□ -2.41
SNU56YDR240C MVB12P42939 101 aa-0.03□□□□□ -2.41
SNU56YDR240C FMN1Q03778 218 aa-0.03□□□□□ -2.41
SNU56YDR240C YPR114WQ06107 315 aa-0.03□□□□□ -2.41
SNU56YDR240C CWC21Q03375 135 aaKnown RBP-0.04□□□□□ -2.42
SNU56YDR240C PLP1Q04004 230 aa-0.04□□□□□ -2.42
SNU56YDR240C HSL1P34244 1518 aa-0.04□□□□□ -2.42
SNU56YDR240C KTI11Q3E840 82 aa-0.05□□□□□ -2.42
SNU56YDR240C GSC2P40989 1895 aa-0.05□□□□□ -2.42
SNU56YDR240C ADE6P38972 1358 aaKnown RBP-0.06□□□□□ -2.42
SNU56YDR240C GRX3Q03835 250 aa-0.06□□□□□ -2.42
SNU56YDR240C THI74Q04083 370 aa-0.06□□□□□ -2.42
SNU56YDR240C YOR034C-AQ3E735 80 aa-0.06□□□□□ -2.42
SNU56YDR240C RPL33AP05744 107 aaKnown RBP-0.07□□□□□ -2.42
SNU56YDR240C SRL3P36167 246 aa-0.07□□□□□ -2.42
SNU56YDR240C SLM6P38343 150 aa-0.07□□□□□ -2.42
SNU56YDR240C IPT1P38954 527 aa-0.07□□□□□ -2.42
SNU56YDR240C VMA10P48836 114 aaKnown RBP-0.07□□□□□ -2.42
SNU56YDR240C YNR064CP53750 290 aa-0.07□□□□□ -2.42
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms