RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 IL31Q6EBC2 164 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 SLC39A4Q6P5W5 647 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 METTL23Q86XA0 190 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 KCNN1Q92952 543 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 ZHX3Q9H4I2 956 aa20.99■□□□□ 0.95
CLN3-262ENST00000637699 ANO9A1A5B4 782 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 ACOT2P49753 483 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 PTPAQ15257 358 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 LRRTM3Q86VH5 581 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 CMTM8Q8IZV2 173 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 THEM5Q8N1Q8 247 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 C12orf50Q8NA57 414 aaPredicted RBP20.98■□□□□ 0.95
CLN3-262ENST00000637699 GAB3Q8WWW8 586 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 DDX1Q92499 740 aaKnown RBP20.98■□□□□ 0.95
CLN3-262ENST00000637699 PYM1Q9BRP8 204 aaKnown RBP20.98■□□□□ 0.95
CLN3-262ENST00000637699 PARVGQ9HBI0 331 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 DSEQ9UL01 958 aa20.98■□□□□ 0.95
CLN3-262ENST00000637699 ATG2BQ96BY7 2078 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 TRAK2O60296 914 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 RPP40O75818 363 aaKnown RBP20.97■□□□□ 0.95
CLN3-262ENST00000637699 NMT1P30419 496 aaKnown RBP20.97■□□□□ 0.95
CLN3-262ENST00000637699 GRSF1Q12849 480 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLN3-262ENST00000637699 RUNX3Q13761 415 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 WSCD1Q658N2 575 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 TRIM68Q6AZZ1 485 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 FSTL4Q6MZW2 842 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 CACNA2D4Q7Z3S7 1137 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 KBTBD6Q86V97 674 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 MAB21L3Q8N8X9 362 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 LRRC15Q8TF66 581 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 KIF2CQ99661 725 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 FAM83CQ9BQN1 747 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 EBF3Q9H4W6 596 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 HPS4Q9NQG7 708 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 RXFP3Q9NSD7 469 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 ABI2Q9NYB9 513 aaPredicted RBP20.97■□□□□ 0.95
CLN3-262ENST00000637699 SLC8A2Q9UPR5 921 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 CCL26Q9Y258 94 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 DERAQ9Y315 318 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 SCN1AP35498 2009 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 TSC2P49815 1807 aa20.97■□□□□ 0.95
CLN3-262ENST00000637699 OTOL1A6NHN0 477 aaPredicted RBP20.96■□□□□ 0.95
CLN3-262ENST00000637699 ANKRD63C9JTQ0 380 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 KRT18P05783 430 aaKnown RBP20.96■□□□□ 0.95
CLN3-262ENST00000637699 CCDC192P0DO97 292 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 HAPLN1P10915 354 aaPredicted RBP20.96■□□□□ 0.95
CLN3-262ENST00000637699 SCP2P22307 547 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 AVPR1AP37288 418 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 ZNF131P52739 623 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 TMEM196Q5HYL7 178 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 ARL6IP4Q66PJ3 421 aaKnown RBP20.96■□□□□ 0.95
CLN3-262ENST00000637699 SPPL2BQ8TCT7 592 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 C2orf15Q8WU43 125 aaKnown RBP20.96■□□□□ 0.95
CLN3-262ENST00000637699 CALML4Q96GE6 196 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 POLR3BQ9NW08 1133 aaPredicted RBP20.96■□□□□ 0.95
CLN3-262ENST00000637699 DPP3Q9NY33 737 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 KIF3AQ9Y496 699 aa20.96■□□□□ 0.95
CLN3-262ENST00000637699 TISP43B9A030 160 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 ATG13O75143 517 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 ZNF806P0C7X5 589 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 UBA7P41226 1012 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 TAF6P49848 677 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 NLRP12P59046 1061 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 BFSP1Q12934 665 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 MCM6Q14566 821 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 ADALQ6DHV7 355 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 TMEM150AQ86TG1 271 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 USP13Q92995 863 aaPredicted RBP20.95■□□□□ 0.94
CLN3-262ENST00000637699 CHFRQ96EP1 664 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 LOXL4Q96JB6 756 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 ASB7Q9H672 318 aa20.95■□□□□ 0.94
CLN3-262ENST00000637699 SPAG17Q6Q759 2223 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 USP24Q9UPU5 2620 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 GREB1Q4ZG55 1949 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 TULP1O00294 542 aaPredicted RBP20.94■□□□□ 0.94
CLN3-262ENST00000637699 TRDMT1O14717 391 aaKnown RBP20.94■□□□□ 0.94
CLN3-262ENST00000637699 EPN2O95208 641 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 EGFP01133 1207 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 ARSAP15289 507 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 RAP1GAPP47736 663 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 LIMK1P53667 647 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 GTF2BQ00403 316 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 SMARCB1Q12824 385 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 ZC2HC1CQ53FD0 456 aaPredicted RBP20.94■□□□□ 0.94
CLN3-262ENST00000637699 N4BP2L1Q5TBK1 243 aaPredicted RBP20.94■□□□□ 0.94
CLN3-262ENST00000637699 STKLD1Q8NE28 680 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 AK8Q96MA6 479 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 SMOC1Q9H4F8 434 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 FBRSL1Q9HCM7 1045 aaKnown RBP20.94■□□□□ 0.94
CLN3-262ENST00000637699 BLOC1S4Q9NUP1 217 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 TDP1Q9NUW8 608 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 ZMYM5Q9UJ78 669 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 MAGED2Q9UNF1 606 aaPredicted RBP20.94■□□□□ 0.94
CLN3-262ENST00000637699 C2CD2Q9Y426 696 aa20.94■□□□□ 0.94
CLN3-262ENST00000637699 CFAP47Q6ZTR5 3102 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 CCDC163A0A0D9SF12 145 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 H3BQV1 296 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 RNF40O75150 1001 aa20.93■□□□□ 0.94
CLN3-262ENST00000637699 TBCAO75347 108 aaKnown RBP20.93■□□□□ 0.94
CLN3-262ENST00000637699 F11P03951 625 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms