RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ART4Q93070 314 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 PTPN18Q99952 460 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 JPH2Q9BR39 696 aaPredicted RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 CWC15Q9P013 229 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 MTRF1LQ9UGC7 380 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 SCINQ9Y6U3 715 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 TRIP11Q15643 1979 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 NDUFAB1O14561 156 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 RPS6KA5O75582 802 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 MDH1P40925 334 aaKnown RBP11.24□□□□□ -0.61
CUX1-221ENST00000622516 ITGA8P53708 1063 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 RAD23BP54727 409 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 CCNA1P78396 465 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 KLF1Q13351 362 aaPredicted RBP11.24□□□□□ -0.61
CUX1-221ENST00000622516 MTHFD1LQ6UB35 978 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 RUFY4Q6ZNE9 571 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 GPR142Q7Z601 462 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 VCPIP1Q96JH7 1222 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 CPXM1Q96SM3 734 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 SYNCQ9H7C4 482 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 YY1AP1Q9H869 796 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 CDHR5Q9HBB8 845 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 AAASQ9NRG9 546 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 PRMT7Q9NVM4 692 aaPredicted RBP11.24□□□□□ -0.61
CUX1-221ENST00000622516 AGAP1Q9UPQ3 857 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 LRRD1A4D1F6 860 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 KRT1P04264 644 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 NFX1Q12986 1120 aaKnown RBP11.24□□□□□ -0.61
CUX1-221ENST00000622516 GLRA4Q5JXX5 417 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 MARCH8Q5T0T0 291 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 ILDR2Q71H61 639 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 B4GALNT4Q76KP1 1039 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 C12orf29Q8N999 325 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 C12orf50Q8NA57 414 aaPredicted RBP11.24□□□□□ -0.61
CUX1-221ENST00000622516 PPTC7Q8NI37 304 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 ELOVL4Q9GZR5 314 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 PCSK1NQ9UHG2 260 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 IP6K2Q9UHH9 426 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 DNPEPQ9ULA0 475 aa11.24□□□□□ -0.61
CUX1-221ENST00000622516 ANK1P16157 1881 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 E7EVH7 732 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 MTM1Q13496 603 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 LONRF1Q17RB8 773 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 EXOC8Q8IYI6 725 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 HEXIM2Q96MH2 286 aaKnown RBP11.23□□□□□ -0.61
CUX1-221ENST00000622516 KATNBL1Q9H079 304 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 MKI67P46013 3256 aaKnown RBP11.23□□□□□ -0.61
CUX1-221ENST00000622516 ASAP2O43150 1006 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 DYNC1LI2O43237 492 aaPredicted RBP11.23□□□□□ -0.61
CUX1-221ENST00000622516 RIPK2O43353 540 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 PSTPIP1O43586 416 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 GRAP2O75791 330 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 IVDP26440 423 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 PSMC1P62191 440 aaKnown RBP11.23□□□□□ -0.61
CUX1-221ENST00000622516 GRM1Q13255 1194 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 SURF1Q15526 300 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 GRIK4Q16099 956 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 KYNUQ16719 465 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 RAB6CQ53S08 254 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 ZNF484Q5JVG2 852 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 KATNAL2Q8IYT4 538 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 SLC4A11Q8NBS3 891 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 SHCBP1Q8NEM2 672 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 NPLOC4Q8TAT6 608 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 HPDLQ96IR7 371 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 APOL6Q9BWW8 343 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 RAB6CQ9H0N0 254 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 CDC42EP4Q9H3Q1 356 aaKnown RBP11.23□□□□□ -0.61
CUX1-221ENST00000622516 CPA4Q9UI42 421 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 RRP15Q9Y3B9 282 aaKnown RBP11.23□□□□□ -0.61
CUX1-221ENST00000622516 CEP83Q9Y592 693 aa11.23□□□□□ -0.61
CUX1-221ENST00000622516 TCRBV5S1A1TA0A578 114 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PPEF2O14830 753 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ERBB2P04626 1255 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 CALB1P05937 261 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 CETPP11597 493 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 KRT3P12035 628 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PSMA2P25787 234 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PLCB3Q01970 1234 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 TAF5Q15542 800 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SH3PXD2AQ5TCZ1 1133 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 C10orf67Q8IYJ2 551 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 OR6J1Q8NGC5 347 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ATL2Q8NHH9 583 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 MAML3Q96JK9 1138 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SLITRK1Q96PX8 696 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 LPIN3Q9BQK8 851 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ZNF148Q9UQR1 794 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PPME1Q9Y570 386 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 TSPAN1O60635 241 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 CD48P09326 243 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ATF2P15336 505 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 IL1R2P27930 398 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PPP2R2AP63151 447 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ADCY1Q08828 1119 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ZNF365Q70YC5 407 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SRLQ86TD4 932 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 EGFL6Q8IUX8 553 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ARFGAP1Q8N6T3 406 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 EXD1Q8NHP7 514 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms