RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 LZTS1Q9Y250 596 aa12.95□□□□□ -0.34
SHKBP1-213ENST00000597325 HCFC2Q9Y5Z7 792 aa12.95□□□□□ -0.34
SHKBP1-213ENST00000597325 CNOT1A5YKK6 2376 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 ITIH6Q6UXX5 1313 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 PDCD11Q14690 1871 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 SMIM28A0A1B0GU29 152 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 SPTLC1O15269 473 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 MEFVO15553 781 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 NARSO43776 548 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 THP07101 528 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 DCNP07585 359 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 KRT19P08727 400 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 GLULP15104 373 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 PMLP29590 882 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 SCNN1GP51170 649 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 SHC2P98077 582 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 GRIK3Q13003 919 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 XKR4Q5GH76 650 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 NOMO2Q5JPE7 1267 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 WDR44Q5JSH3 913 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 SPECC1LQ69YQ0 1117 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 ALKAL1Q6UXT8 129 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 C15orf39Q6ZRI6 1047 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 TRAPPC11Q7Z392 1133 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 TMC6Q7Z403 805 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 VSTM4Q8IW00 320 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 NEK11Q8NG66 645 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 HELQQ8TDG4 1101 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 ZNF516Q92618 1163 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 CRACR2AQ9BSW2 395 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 LSM14BQ9BX40 385 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 INTS2Q9H0H0 1204 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 KCNK12Q9HB15 430 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 PARD6AQ9NPB6 346 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 DPP3Q9NY33 737 aa12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHKBP1-213ENST00000597325 PTGESO14684 152 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 SLC30A4O14863 429 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 HLA-DRAP01903 254 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 C4BPAP04003 597 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 FGFR1P11362 822 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 TRIM21P19474 475 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 CYP3A5P20815 502 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 PLCB3Q01970 1234 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 NCOA4Q13772 614 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 TRIM14Q14142 442 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 ZNF528Q3MIS6 628 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 TRIM65Q6PJ69 517 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 FEZF2Q8TBJ5 459 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 TAS1R2Q8TE23 839 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 C18orf25Q96B23 403 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 IQCDQ96DY2 449 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 FAM84AQ96KN4 292 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 ZNF560Q96MR9 790 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 ZMAT2Q96NC0 199 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 FAM193BQ96PV7 902 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 TCF25Q9BQ70 676 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 MRPL9Q9BYD2 267 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 TBC1D17Q9HA65 648 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 NGRNQ9NPE2 291 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 RAB20Q9NX57 234 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 KANSL3Q9P2N6 904 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 HCSTQ9UBK5 93 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 TUBGCP4Q9UGJ1 667 aa12.93□□□□□ -0.34
SHKBP1-213ENST00000597325 STK25O00506 426 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 INPPL1O15357 1258 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 ZC3H11AO75152 810 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 OFD1O75665 1012 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 POMCP01189 267 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 ITGB3P05106 788 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 PROS1P07225 676 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 RFX1P22670 979 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 PON1P27169 355 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 POLR2BP30876 1174 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 PBX1P40424 430 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 RBP5P82980 135 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 RNASELQ05823 741 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 MYO1EQ12965 1108 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 ZNF699Q32M78 642 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 CLLU1OSQ5K130 101 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 PHLDB3Q6NSJ2 640 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 PPFIBP1Q86W92 1011 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 C1orf127Q8N9H9 656 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 COLGALT1Q8NBJ5 622 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 NT5C1BQ96P26 610 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 PPP1R10Q96QC0 940 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 NUP58Q9BVL2 599 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 FAM207AQ9NSI2 230 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 RNF19AQ9NV58 838 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 AGAP1Q9UPQ3 857 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 SIK3Q9Y2K2 1263 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 COQ4Q9Y3A0 265 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 DAAM1Q9Y4D1 1078 aa12.92□□□□□ -0.34
SHKBP1-213ENST00000597325 IGF2RP11717 2491 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 TBKBP1A7MCY6 615 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 VNN1O95497 513 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 CFHP08603 1231 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 SLC9A1P19634 815 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 PNPLA4P41247 253 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 KLK7P49862 253 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms