RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 EFHBQ8N7U6 833 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 SPATA18Q8TC71 538 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 MSLNLQ96KJ4 702 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 GAS2L1Q99501 681 aaPredicted RBP11.32□□□□□ -0.6
LIG1-210ENST00000596332 ZSWIM1Q9BR11 485 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 ACBD6Q9BR61 282 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 GPR88Q9GZN0 384 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 TLE6Q9H808 572 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 PRDM6Q9NQX0 595 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.32□□□□□ -0.6
LIG1-210ENST00000596332 TMEM30AQ9NV96 361 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 CNTN6Q9UQ52 1028 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 HCFC2Q9Y5Z7 792 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 LGALS16A8MUM7 142 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 BECN2A8MW95 431 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 N4BP1O75113 896 aaKnown RBP11.31□□□□□ -0.6
LIG1-210ENST00000596332 TBX10O75333 385 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 PDGFRBP09619 1106 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 PRKCSHP14314 528 aaPredicted RBP11.31□□□□□ -0.6
LIG1-210ENST00000596332 NDUFV1P49821 464 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 GPR17Q13304 367 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 CUL2Q13617 745 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 CCDC85BQ15834 202 aaPredicted RBP11.31□□□□□ -0.6
LIG1-210ENST00000596332 KIAA1841Q6NSI8 718 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 SYCE2Q6PIF2 218 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 RRAGAQ7L523 313 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 TTC9BQ8N6N2 239 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 ZNF461Q8TAF7 563 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 ERGIC2Q96RQ1 377 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 MMS19Q96T76 1030 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 ELOVL4Q9GZR5 314 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 NIF3L1Q9GZT8 377 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 S1PR5Q9H228 398 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 GANQ9H2C0 597 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 CYP3A43Q9HB55 503 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 DDX43Q9NXZ2 648 aaKnown RBP11.31□□□□□ -0.6
LIG1-210ENST00000596332 GTF3C4Q9UKN8 822 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 DSEQ9UL01 958 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 SSX2IPQ9Y2D8 614 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 PLXNA3P51805 1871 aa11.31□□□□□ -0.6
LIG1-210ENST00000596332 MTMR11A4FU01 709 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 OR6C75A6NL08 312 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 H7C4K7 107 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 NRG2O14511 850 aaPredicted RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 ATF2P15336 505 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 KLRC2P26717 231 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 GNL1P36915 607 aaPredicted RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 LHX1P48742 406 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 ZNF132P52740 706 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 NDST1P52848 882 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 RAD23BP54727 409 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 FANCCQ00597 558 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 GCNT1Q02742 428 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 ORC1Q13415 861 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 EXOC3L4Q17RC7 722 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 INTS6LQ5JSJ4 861 aaKnown RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 KLHDC7AQ5VTJ3 777 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 ZNF280DQ6N043 979 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 PDXDC1Q6P996 788 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 POTEHQ6S545 545 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 SCARA5Q6ZMJ2 495 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 GBP6Q6ZN66 633 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 SLC4A11Q8NBS3 891 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 ATAD1Q8NBU5 361 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 RNF214Q8ND24 703 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 ZNF707Q96C28 371 aaPredicted RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 PABPC5Q96DU9 382 aaKnown RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 CDCA3Q99618 268 aaPredicted RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 IGFLR1Q9H665 355 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 CISHQ9NSE2 258 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 GCNT4Q9P109 453 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 MAGEC2Q9UBF1 373 aaPredicted RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 CDH22Q9UJ99 828 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 FBXW11Q9UKB1 542 aa11.3□□□□□ -0.6
LIG1-210ENST00000596332 BARX2Q9UMQ3 279 aaPredicted RBP11.3□□□□□ -0.6
LIG1-210ENST00000596332 CALCAP01258 141 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 PTPN1P18031 435 aaKnown RBP11.29□□□□□ -0.6
LIG1-210ENST00000596332 CACNA2D1P54289 1103 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 PSMC1P62191 440 aaKnown RBP11.29□□□□□ -0.6
LIG1-210ENST00000596332 TNNC1P63316 161 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 IQCEQ6IPM2 695 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 UNC93AQ86WB7 457 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 TCEAL8Q8IYN2 117 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 C12orf76Q8N812 135 aaPredicted RBP11.29□□□□□ -0.6
LIG1-210ENST00000596332 C12orf29Q8N999 325 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 OR6B3Q8NGW1 331 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 SYT15Q9BQS2 421 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 EMILIN2Q9BXX0 1053 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 OXCT2Q9BYC2 517 aaPredicted RBP11.29□□□□□ -0.6
LIG1-210ENST00000596332 B3GNT5Q9BYG0 378 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 RHOBTB2Q9BYZ6 727 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 PLCB1Q9NQ66 1216 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 CEP72Q9P209 647 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 AFF4Q9UHB7 1163 aaKnown RBP11.29□□□□□ -0.6
LIG1-210ENST00000596332 CDH9Q9ULB4 789 aa11.29□□□□□ -0.6
LIG1-210ENST00000596332 ARHGEF37A1IGU5 675 aa11.28□□□□□ -0.6
LIG1-210ENST00000596332 FOXN3O00409 490 aaPredicted RBP11.28□□□□□ -0.6
LIG1-210ENST00000596332 RFPL2O75678 378 aa11.28□□□□□ -0.6
LIG1-210ENST00000596332 ADH1AP07327 375 aa11.28□□□□□ -0.6
LIG1-210ENST00000596332 CDK11BP21127 795 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms