RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CALCOCO2Q13137 446 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 CCNG2Q16589 344 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 DENND2CQ68D51 928 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 CHADLQ6NUI6 762 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 DENND1BQ6P3S1 775 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 ILDR2Q71H61 639 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 ANKS1BQ7Z6G8 1248 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 RNF25Q96BH1 459 aaPredicted RBP20.84■□□□□ 0.93
CLIP3-206ENST00000593074 HEMGNQ9BXL5 484 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 SETD4Q9NVD3 440 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 GAS8O95995 478 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 RARGP13631 454 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 IVDP26440 423 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 GSCP56915 257 aaPredicted RBP20.83■□□□□ 0.93
CLIP3-206ENST00000593074 IFFO1Q0D2I5 559 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 NFX1Q12986 1120 aaKnown RBP20.83■□□□□ 0.93
CLIP3-206ENST00000593074 PIGHQ14442 188 aaPredicted RBP20.83■□□□□ 0.93
CLIP3-206ENST00000593074 KRT71Q3SY84 523 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 DCUN1D2Q6PH85 259 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 FOXR1Q6PIV2 292 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 RHBDF2Q6PJF5 856 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 ZNF410Q86VK4 478 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 RCOR2Q8IZ40 523 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 ARFGAP2Q8N6H7 521 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 ATL2Q8NHH9 583 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 RBM41Q96IZ5 413 aaKnown RBP20.83■□□□□ 0.93
CLIP3-206ENST00000593074 SMYD3Q9H7B4 428 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 GNEQ9Y223 722 aaKnown RBP20.83■□□□□ 0.93
CLIP3-206ENST00000593074 NEU2Q9Y3R4 380 aa20.83■□□□□ 0.93
CLIP3-206ENST00000593074 TCF4P15884 667 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 SSR1P43307 286 aaKnown RBP20.82■□□□□ 0.92
CLIP3-206ENST00000593074 PTPN20Q4JDL3 420 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 CYP4A22Q5TCH4 519 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 TTC19Q6DKK2 380 aaPredicted RBP20.82■□□□□ 0.92
CLIP3-206ENST00000593074 HOOK3Q86VS8 718 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 TMEM130Q8N3G9 435 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 SNF8Q96H20 258 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 CYP3A43Q9HB55 503 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 LRRC4CQ9HCJ2 640 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 ASIC3Q9UHC3 531 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 C2CD2Q9Y426 696 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 A0A1B0GUA9 196 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 CILPO75339 1184 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 SHBGP04278 402 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 CD19P15391 556 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 ITIH2P19823 946 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 GJC1P36383 396 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 CDH8P55286 799 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 TMEM132DQ14C87 1099 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 SLC4A11Q8NBS3 891 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 SLITRK1Q96PX8 696 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 SEMA4AQ9H3S1 761 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 FLRT1Q9NZU1 646 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 CYTH4Q9UIA0 394 aa20.82■□□□□ 0.92
CLIP3-206ENST00000593074 F8VP50 259 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 POLR2BP30876 1174 aaKnown RBP20.81■□□□□ 0.92
CLIP3-206ENST00000593074 PTPN7P35236 360 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 MDH1P40925 334 aaKnown RBP20.81■□□□□ 0.92
CLIP3-206ENST00000593074 RGMBQ6NW40 437 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 TLCD1Q96CP7 247 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 HMGXB4Q9UGU5 601 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 SLC12A6Q9UHW9 1150 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 ITGA11Q9UKX5 1188 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 ZNF865P0CJ78 1059 aaPredicted RBP20.81■□□□□ 0.92
CLIP3-206ENST00000593074 HPDP32754 393 aaPredicted RBP20.81■□□□□ 0.92
CLIP3-206ENST00000593074 CETN2P41208 172 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 COPS2P61201 443 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 CDC42EP1Q00587 391 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 PTPN11Q06124 597 aaPredicted RBP20.81■□□□□ 0.92
CLIP3-206ENST00000593074 SLC29A2Q14542 456 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 C17orf99Q6UX52 265 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 NT5DC4Q86YG4 428 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 TWNKQ96RR1 684 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 ADPGKQ9BRR6 497 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 ELOVL4Q9GZR5 314 aa20.81■□□□□ 0.92
CLIP3-206ENST00000593074 NRCAMQ92823 1304 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 RIPK2O43353 540 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 STAU1O95793 577 aaKnown RBP20.8■□□□□ 0.92
CLIP3-206ENST00000593074 KRT1P04264 644 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 P4HA1P13674 534 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 LSP1P33241 339 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 GUCY1A3Q02108 690 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 ATP13A4Q4VNC1 1196 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 OLFML2BQ68BL8 750 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 USP6NLQ92738 828 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 CCDC114Q96M63 670 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 TMEM109Q9BVC6 243 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 FAM124BQ9H5Z6 455 aaPredicted RBP20.8■□□□□ 0.92
CLIP3-206ENST00000593074 AAASQ9NRG9 546 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 KLHL11Q9NVR0 708 aa20.8■□□□□ 0.92
CLIP3-206ENST00000593074 SIGLEC16A6NMB1 481 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 F2P00734 622 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 SMIM10L2AP0DMW4 78 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 SMIM10L2BP0DMW5 78 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 FGFR4P22455 802 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 INHBEP58166 350 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 CAV1Q03135 178 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 POLNQ7Z5Q5 900 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 SAPCD2Q86UD0 394 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 TLK2Q86UE8 772 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms