RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CPA6Q8N4T0 437 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 SLC39A7Q92504 469 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 FNBP1Q96RU3 617 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 IL21Q9HBE4 155 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 CNTN3Q9P232 1028 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 SLC27A5Q9Y2P5 690 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 CEP192Q8TEP8 1941 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 UNC79Q9P2D8 2635 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 A0A087WV48 116 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 SERPINF2P08697 491 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 ATP2B1P20020 1258 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 BFSP1Q12934 665 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 SLC14A1Q13336 389 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 PPP2R5AQ15172 486 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 RABEPKQ7Z6M1 372 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 TMEFF1Q8IYR6 380 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 FBXL16Q8N461 479 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 MINDY1Q8N5J2 469 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 CEP120Q8N960 986 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 USP33Q8TEY7 942 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 USP13Q92995 863 aaPredicted RBP19.71■□□□□ 0.75
CLK3-227ENST00000570296 C18orf25Q96B23 403 aaPredicted RBP19.71■□□□□ 0.75
CLK3-227ENST00000570296 DNAAF2Q9NVR5 837 aaKnown RBP19.71■□□□□ 0.75
CLK3-227ENST00000570296 CCL26Q9Y258 94 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 TNFSF13BQ9Y275 285 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 RAI2Q9Y5P3 530 aa19.71■□□□□ 0.75
CLK3-227ENST00000570296 GOLGA4Q13439 2230 aaKnown RBP19.7■□□□□ 0.74
CLK3-227ENST00000570296 MTMR11A4FU01 709 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 ALDH1A2O94788 518 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 DEXIO95424 95 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 SSRP1Q08945 709 aaKnown RBP19.7■□□□□ 0.74
CLK3-227ENST00000570296 MYBPC2Q14324 1141 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 VEPH1Q14D04 833 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 ZNF605Q86T29 641 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 SCUBE3Q8IX30 993 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 ATAD1Q8NBU5 361 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 NACC1Q96RE7 527 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 ECT2Q9H8V3 914 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 CAPN10Q9HC96 672 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 TDP1Q9NUW8 608 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 MMP17Q9ULZ9 603 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 APOBEC2Q9Y235 224 aaKnown RBP19.7■□□□□ 0.74
CLK3-227ENST00000570296 PCDHB9Q9Y5E1 797 aa19.7■□□□□ 0.74
CLK3-227ENST00000570296 ATXN7O15265 892 aaPredicted RBP19.69■□□□□ 0.74
CLK3-227ENST00000570296 DDX6P26196 483 aaKnown RBP eCLIP19.69■□□□□ 0.74
CLK3-227ENST00000570296 CRY1Q16526 586 aa19.69■□□□□ 0.74
CLK3-227ENST00000570296 LSM14AQ8ND56 463 aaKnown RBP19.69■□□□□ 0.74
CLK3-227ENST00000570296 CDT1Q9H211 546 aa19.69■□□□□ 0.74
CLK3-227ENST00000570296 ATXN2Q99700 1313 aaKnown RBP19.69■□□□□ 0.74
CLK3-227ENST00000570296 OBSL1O75147 1896 aa19.69■□□□□ 0.74
CLK3-227ENST00000570296 SOAT2O75908 522 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 ITPKAP23677 461 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 OSTNP61366 133 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 BYSLQ13895 437 aaKnown RBP19.68■□□□□ 0.74
CLK3-227ENST00000570296 ZNF268Q14587 947 aaPredicted RBP19.68■□□□□ 0.74
CLK3-227ENST00000570296 USP37Q86T82 979 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 TTC9BQ8N6N2 239 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 PNPLA1Q8N8W4 532 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 WHAMMQ8TF30 809 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 RLN3Q8WXF3 142 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 ACAP3Q96P50 834 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 LPIN3Q9BQK8 851 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 NCOA5Q9HCD5 579 aaKnown RBP19.68■□□□□ 0.74
CLK3-227ENST00000570296 FSCN3Q9NQT6 498 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 PCDHA12Q9UN75 941 aa19.68■□□□□ 0.74
CLK3-227ENST00000570296 A0A087WWV3 80 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 ARHGAP33O14559 1287 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 SH3BP5O60239 455 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 CPA1P15085 419 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 TUFMP49411 452 aaKnown RBP19.67■□□□□ 0.74
CLK3-227ENST00000570296 ZNF568Q3ZCX4 644 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 LARP1BQ659C4 914 aaKnown RBP19.67■□□□□ 0.74
CLK3-227ENST00000570296 RIN3Q8TB24 985 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 ATP2A3Q93084 1043 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 CAMK1GQ96NX5 476 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 KIFC3Q9BVG8 833 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 AGXT2Q9BYV1 514 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 CIZ1Q9ULV3 898 aaPredicted RBP19.67■□□□□ 0.74
CLK3-227ENST00000570296 TIMM13Q9Y5L4 95 aaPredicted RBP19.67■□□□□ 0.74
CLK3-227ENST00000570296 PTPRQQ9UMZ3 2332 aa19.67■□□□□ 0.74
CLK3-227ENST00000570296 LARGE1O95461 756 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 AARSP49588 968 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLK3-227ENST00000570296 CCT2P78371 535 aaKnown RBP19.66■□□□□ 0.74
CLK3-227ENST00000570296 C2orf27AQ580R0 203 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 TOGARAM2Q6ZUX3 1019 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 TTC30AQ86WT1 665 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 MAB21L3Q8N8X9 362 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 OSCP1Q8WVF1 389 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 CRELD1Q96HD1 420 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 PTPRHQ9HD43 1115 aa19.66■□□□□ 0.74
CLK3-227ENST00000570296 POLMQ9NP87 494 aaPredicted RBP19.66■□□□□ 0.74
CLK3-227ENST00000570296 SYPP08247 313 aa19.65■□□□□ 0.74
CLK3-227ENST00000570296 MCF2P10911 925 aa19.65■□□□□ 0.74
CLK3-227ENST00000570296 ATF6P18850 670 aa19.65■□□□□ 0.74
CLK3-227ENST00000570296 CYP11B2P19099 503 aa19.65■□□□□ 0.74
CLK3-227ENST00000570296 PDIA3P30101 505 aaKnown RBP19.65■□□□□ 0.74
CLK3-227ENST00000570296 EVCP57679 992 aa19.65■□□□□ 0.74
CLK3-227ENST00000570296 MTF1Q14872 753 aa19.65■□□□□ 0.74
CLK3-227ENST00000570296 TAF12Q16514 161 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms