RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 DPH6Q7L8W6 267 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 TMC8Q8IU68 726 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 SMYD4Q8IYR2 804 aaPredicted RBP13.99□□□□□ -0.17
CNOT1-220ENST00000569916 DCP1BQ8IZD4 617 aaKnown RBP13.99□□□□□ -0.17
CNOT1-220ENST00000569916 SPPL2BQ8TCT7 592 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 C2orf15Q8WU43 125 aaKnown RBP13.99□□□□□ -0.17
CNOT1-220ENST00000569916 KBTBD7Q8WVZ9 684 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 TIGD1Q96MW7 591 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 PKMYT1Q99640 499 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 SEPT5Q99719 369 aaPredicted RBP13.99□□□□□ -0.17
CNOT1-220ENST00000569916 ACBD6Q9BR61 282 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 LRRC3Q9BY71 257 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 ASAH2Q9NR71 780 aa13.99□□□□□ -0.17
CNOT1-220ENST00000569916 COL4A2P08572 1712 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 GREB1Q4ZG55 1949 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 ZNF197O14709 1029 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 GADD45BO75293 160 aaPredicted RBP13.98□□□□□ -0.17
CNOT1-220ENST00000569916 MICAL2O94851 1124 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 STAU1O95793 577 aaKnown RBP13.98□□□□□ -0.17
CNOT1-220ENST00000569916 HAPLN1P10915 354 aaPredicted RBP13.98□□□□□ -0.17
CNOT1-220ENST00000569916 SRFP11831 508 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 ATF6P18850 670 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 NR2F2P24468 414 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 ALDH1A3P47895 512 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 LHX1P48742 406 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 EPHB3P54753 998 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 DLG4P78352 724 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 TSPY1Q01534 308 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 CCDC142Q17RM4 750 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 MGAT5BQ3V5L5 792 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 INTS6LQ5JSJ4 861 aaKnown RBP13.98□□□□□ -0.17
CNOT1-220ENST00000569916 CYP4A22Q5TCH4 519 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 CEP135Q66GS9 1140 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 MTSS1LQ765P7 747 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 FBXL6Q8N531 539 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 LEMD2Q8NC56 503 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 SPATA20Q8TB22 786 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 ERCC4Q92889 916 aaPredicted RBP13.98□□□□□ -0.17
CNOT1-220ENST00000569916 PSMG2Q969U7 264 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 MCRS1Q96EZ8 462 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 GSDMAQ96QA5 445 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 LPIN3Q9BQK8 851 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 RPP25Q9BUL9 199 aaKnown RBP13.98□□□□□ -0.17
CNOT1-220ENST00000569916 XYLT2Q9H1B5 865 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 RMND1Q9NWS8 449 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 ABI2Q9NYB9 513 aaPredicted RBP13.98□□□□□ -0.17
CNOT1-220ENST00000569916 GDE1Q9NZC3 331 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 HCN4Q9Y3Q4 1203 aa13.98□□□□□ -0.17
CNOT1-220ENST00000569916 MAPK13O15264 365 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 AKAP3O75969 853 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 C4BPAP04003 597 aaKnown RBP13.97□□□□□ -0.17
CNOT1-220ENST00000569916 MYL4P12829 197 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 GJA1P17302 382 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 WARSP23381 471 aaKnown RBP13.97□□□□□ -0.17
CNOT1-220ENST00000569916 PCSK1P29120 753 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 TUFMP49411 452 aaKnown RBP13.97□□□□□ -0.17
CNOT1-220ENST00000569916 AP3M2P53677 418 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 MYL6P60660 151 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 TRPC3Q13507 836 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 NFE2Q16621 373 aaPredicted RBP13.97□□□□□ -0.17
CNOT1-220ENST00000569916 COBLL1Q53SF7 1204 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 C1orf220Q5T0J3 134 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 SUGP1Q8IWZ8 645 aaKnown RBP13.97□□□□□ -0.17
CNOT1-220ENST00000569916 SHKBP1Q8TBC3 707 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 TMC2Q8TDI7 906 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 KXD1Q9BQD3 176 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 ZNF334Q9HCZ1 680 aaPredicted RBP13.97□□□□□ -0.17
CNOT1-220ENST00000569916 CHMP5Q9NZZ3 219 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 FRMD4BQ9Y2L6 1034 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 ASB3Q9Y575 518 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 PCDHB5Q9Y5E4 795 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 PCDHA5Q9Y5H7 936 aa13.97□□□□□ -0.17
CNOT1-220ENST00000569916 KIF26AQ9ULI4 1882 aaPredicted RBP13.96□□□□□ -0.17
CNOT1-220ENST00000569916 COL4A3Q01955 1670 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 PHACTR2O75167 634 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 TACC1O75410 805 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 VNN1O95497 513 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 CFHP08603 1231 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 FCARP24071 287 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 ATICP31939 592 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 VCPP55072 806 aaKnown RBP13.96□□□□□ -0.17
CNOT1-220ENST00000569916 BIRC3Q13489 604 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 TEAD2Q15562 447 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 EDRF1Q3B7T1 1238 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 WDR72Q3MJ13 1102 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 ZNF658Q5TYW1 1059 aaPredicted RBP13.96□□□□□ -0.17
CNOT1-220ENST00000569916 DNAJB7Q7Z6W7 309 aaPredicted RBP13.96□□□□□ -0.17
CNOT1-220ENST00000569916 ITIH5Q86UX2 942 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 ELOA2Q8IYF1 753 aaPredicted RBP13.96□□□□□ -0.17
CNOT1-220ENST00000569916 SMARCE1Q969G3 411 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 SYAP1Q96A49 352 aaPredicted RBP13.96□□□□□ -0.17
CNOT1-220ENST00000569916 MMS19Q96T76 1030 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 SYT15Q9BQS2 421 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 MRPL45Q9BRJ2 306 aaKnown RBP13.96□□□□□ -0.17
CNOT1-220ENST00000569916 PI4K2AQ9BTU6 479 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 VRTNQ9H8Y1 702 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 SLC2A4RGQ9NR83 387 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 GTF3C4Q9UKN8 822 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 NME7Q9Y5B8 376 aa13.96□□□□□ -0.17
CNOT1-220ENST00000569916 A0A1W2PRU2 124 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms