RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MAMSTRQ6ZN01 415 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 HS6ST3Q8IZP7 471 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 LEMD2Q8NC56 503 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 TMEM161BQ8NDZ6 487 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 APPL2Q8NEU8 664 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 BEST2Q8NFU1 509 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 ATRIPQ8WXE1 791 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 SMARCD2Q92925 531 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 TRIM44Q96DX7 344 aaPredicted RBP15.13■□□□□ 0.01
LDLR-213ENST00000560502 ZSWIM3Q96MP5 696 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 TCHPQ9BT92 498 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 TRMT61BQ9BVS5 477 aaKnown RBP15.13■□□□□ 0.01
LDLR-213ENST00000560502 BRD9Q9H8M2 597 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 TRPV4Q9HBA0 871 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 PANK4Q9NVE7 773 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 NCDNQ9UBB6 729 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 SMG5Q9UPR3 1016 aaKnown RBP15.13■□□□□ 0.01
LDLR-213ENST00000560502 CTNND2Q9UQB3 1225 aa15.13■□□□□ 0.01
LDLR-213ENST00000560502 EPG5Q9HCE0 2579 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 SFI1A8K8P3 1242 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 M0QZQ0 153 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 ARNTLO00327 626 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 MAN2B1O00754 1011 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 TBCAO75347 108 aaKnown RBP15.12■□□□□ 0.01
LDLR-213ENST00000560502 PLS3P13797 630 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 PSMC3P17980 439 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 CCNE1P24864 410 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 LRPAP1P30533 357 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 AARSP49588 968 aaKnown RBP eCLIP15.12■□□□□ 0.01
LDLR-213ENST00000560502 MCL1Q07820 350 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 TWF1Q12792 350 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 RSPO4Q2I0M5 234 aaPredicted RBP15.12■□□□□ 0.01
LDLR-213ENST00000560502 SEZ6Q53EL9 994 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 CYP4A22Q5TCH4 519 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 DYMQ7RTS9 669 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 ELMOD1Q8N336 334 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 TMEM130Q8N3G9 435 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 ANKRD20A12PQ8NF67 263 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 DEPDC1BQ8WUY9 529 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 NELFBQ8WX92 580 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 KCNN1Q92952 543 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 IRF7Q92985 503 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 IER2Q9BTL4 223 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 FAM126AQ9BYI3 521 aaPredicted RBP15.12■□□□□ 0.01
LDLR-213ENST00000560502 HAPLN2Q9GZV7 340 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 HSD3B7Q9H2F3 369 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 ZNF334Q9HCZ1 680 aaPredicted RBP15.12■□□□□ 0.01
LDLR-213ENST00000560502 OLFML3Q9NRN5 406 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 ANKFY1Q9P2R3 1169 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 YIPF1Q9Y548 306 aa15.12■□□□□ 0.01
LDLR-213ENST00000560502 TTC26A0AVF1 554 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 OAZ2O95190 189 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 FGFR1OPO95684 399 aaKnown RBP15.11■□□□□ 0.01
LDLR-213ENST00000560502 CXCL8P10145 99 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 LRRC63Q05C16 580 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 STRN3Q13033 797 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 ZBTB6Q15916 424 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 TPD52L1Q16890 204 aaPredicted RBP15.11■□□□□ 0.01
LDLR-213ENST00000560502 ARSHQ5FYA8 562 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 CDKAL1Q5VV42 579 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 IQCEQ6IPM2 695 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 KLHL10Q6JEL2 608 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 RNF19BQ6ZMZ0 732 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 STXBP4Q6ZWJ1 553 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 FAM114A1Q8IWE2 563 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 GPR161Q8N6U8 529 aaKnown RBP15.11■□□□□ 0.01
LDLR-213ENST00000560502 KIAA0895Q8NCT3 520 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 SHKBP1Q8TBC3 707 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 LRRC3Q9BY71 257 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 THAP9Q9H5L6 903 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 PLEKHA5Q9HAU0 1116 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 ASAH2Q9NR71 780 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 FANCLQ9NW38 375 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 NDRG2Q9UN36 371 aaKnown RBP15.11■□□□□ 0.01
LDLR-213ENST00000560502 KIF26AQ9ULI4 1882 aaPredicted RBP15.11■□□□□ 0.01
LDLR-213ENST00000560502 UBE4BO95155 1302 aa15.11■□□□□ 0.01
LDLR-213ENST00000560502 ACACBO00763 2458 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 CACNA1BQ00975 2339 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 AP5Z1O43299 807 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 CPB1P15086 417 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 GJA1P17302 382 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 TGM1P22735 817 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 GDI1P31150 447 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 VIPR2P41587 438 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 ZNF131P52739 623 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 FANCCQ00597 558 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 STK4Q13043 487 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 CENPPQ6IPU0 288 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 TMC8Q8IU68 726 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 SMYD4Q8IYR2 804 aaPredicted RBP15.1■□□□□ 0.01
LDLR-213ENST00000560502 ZSCAN18Q8TBC5 510 aaPredicted RBP15.1■□□□□ 0.01
LDLR-213ENST00000560502 RSPRY1Q96DX4 576 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 ZNF512Q96ME7 567 aaPredicted RBP15.1■□□□□ 0.01
LDLR-213ENST00000560502 REEP2Q9BRK0 252 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 OXCT2Q9BYC2 517 aaPredicted RBP15.1■□□□□ 0.01
LDLR-213ENST00000560502 CRISPLD1Q9H336 500 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 KCNG1Q9UIX4 513 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.1■□□□□ 0.01
LDLR-213ENST00000560502 PIAS3Q9Y6X2 628 aa15.1■□□□□ 0.01
LDLR-213ENST00000560502 EIF3DO15371 548 aaKnown RBP eCLIP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms