RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SMYD3Q9H7B4 428 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 VRTNQ9H8Y1 702 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 RAB20Q9NX57 234 aa12.26□□□□□ -0.45
CCDC88C-212ENST00000556767 MTCL1Q9Y4B5 1905 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 A8MXQ7 604 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 LRRN2O75325 713 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 TACC1O75410 805 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 LETM1O95202 739 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 SEC24AO95486 1093 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 AFPP02771 609 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 LMO2P25791 158 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 MTHFRP42898 656 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 CDH8P55286 799 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 PSMC1P62191 440 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 KCNH2Q12809 1159 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 LRMPQ12912 555 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 DUSP4Q13115 394 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 CBX2Q14781 532 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 UVSSAQ2YD98 709 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 INTS6LQ5JSJ4 861 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 GPR149Q86SP6 731 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 LRRTM3Q86VH5 581 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 TRIM59Q8IWR1 403 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 ATAD1Q8NBU5 361 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 CMASQ8NFW8 434 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 FEZF2Q8TBJ5 459 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 KBTBD7Q8WVZ9 684 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 SYT15Q9BQS2 421 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 PRKD2Q9BZL6 878 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 NAT10Q9H0A0 1025 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 ZDHHC7Q9NXF8 308 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 ABI2Q9NYB9 513 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 SLC27A5Q9Y2P5 690 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 NFE2L3Q9Y4A8 694 aa12.25□□□□□ -0.45
CCDC88C-212ENST00000556767 SYCE3A1L190 88 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 MTMR11A4FU01 709 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 GABRDO14764 452 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 ATP2C2O75185 946 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 XYLBO75191 536 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 HNRNPA1P09651 372 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 FAM163BP0C2L3 166 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 BMP1P13497 986 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 PRKCSHP14314 528 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 CD58P19256 250 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 ASPAP45381 313 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 MARSP56192 900 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 MCCD1P59942 119 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 SMAD2Q15796 467 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 NFE2Q16621 373 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 MGAT5BQ3V5L5 792 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 ANO6Q4KMQ2 910 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 SPATA2LQ8IUW3 424 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 TCEAL8Q8IYN2 117 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 ELMOD1Q8N336 334 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 ENOX1Q8TC92 643 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 FAM200AQ8TCP9 573 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 NECTIN4Q96NY8 510 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 SEPT5Q99719 369 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 NIF3L1Q9GZT8 377 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 SDCBP2Q9H190 292 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 APOBEC3GQ9HC16 384 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 SAMSN1Q9NSI8 373 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 TCF20Q9UGU0 1960 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 GTF3C4Q9UKN8 822 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 CDH9Q9ULB4 789 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 MAFFQ9ULX9 164 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 PCDHB5Q9Y5E4 795 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 INSL5Q9Y5Q6 135 aa12.24□□□□□ -0.45
CCDC88C-212ENST00000556767 MYBPHLA2RUH7 354 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 KCNJ18B7U540 433 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 PES1O00541 588 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 SP100P23497 879 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 ALDH1A3P47895 512 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 CYP27A1Q02318 531 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 TWF1Q12792 350 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 SMARCB1Q12824 385 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 PLD1Q13393 1074 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 KCNJ12Q14500 433 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 NFKBIBQ15653 356 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 CCDC142Q17RM4 750 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 LIMS2Q7Z4I7 341 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 IRF2BP1Q8IU81 584 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 SPPL2BQ8TCT7 592 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 ADAMTS19Q8TE59 1207 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 C2orf15Q8WU43 125 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 SUSD6Q92537 303 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 TATDN2Q93075 761 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 ZNF707Q96C28 371 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 RPGRIP1Q96KN7 1286 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 NT5C1BQ96P26 610 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 DPEP3Q9H4B8 488 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 POMKQ9H5K3 350 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 CYP3A43Q9HB55 503 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 TMLHEQ9NVH6 421 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 COQ4Q9Y3A0 265 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 YIPF1Q9Y548 306 aa12.23□□□□□ -0.45
CCDC88C-212ENST00000556767 P4HA2O15460 535 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 SOAT2O75908 522 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 VNN2O95498 520 aa12.22□□□□□ -0.45
CCDC88C-212ENST00000556767 PTPN1P18031 435 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms