RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KINO60870 393 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 PHACTR2O75167 634 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 LRRN2O75325 713 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 MOSPD3O75425 235 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 SMC2O95347 1197 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 MYL4P12829 197 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 PTPN2P17706 415 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 CLDN10P78369 228 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 MYO1EQ12965 1108 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 ADAM9Q13443 819 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 BIRC3Q13489 604 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 HTR4Q13639 388 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 PRSS36Q5K4E3 855 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 ZNF658Q5TYW1 1059 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 ANKRD40Q6AI12 368 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 RTL10Q7L3V2 364 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 GPIHBP1Q8IV16 184 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 TOP6BLQ8N6T0 577 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 GIPC2Q8TF65 315 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 TMEM174Q8WUU8 243 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 FGF14Q92915 247 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 ASIC4Q96FT7 647 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 ZSWIM3Q96MP5 696 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 MMS19Q96T76 1030 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 MRPL45Q9BRJ2 306 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 PI4K2AQ9BTU6 479 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 LRRC3Q9BY71 257 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 OXCT2Q9BYC2 517 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 ZNF334Q9HCZ1 680 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 NXF1Q9UBU9 619 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 GTF3C4Q9UKN8 822 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 FRMD4BQ9Y2L6 1034 aa12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 MRPS23Q9Y3D9 190 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-208ENST00000554165 ANHXE9PGG2 379 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 ATF6P18850 670 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 CYP2F1P24903 491 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 RAP1GAPP47736 663 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 VAMP7P51809 220 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 CDH8P55286 799 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 PSMC1P62191 440 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 PPP3CAQ08209 521 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 TRPC3Q13507 836 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 MTMR3Q13615 1198 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 NCOA4Q13772 614 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 CAMK4Q16566 473 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 WDR72Q3MJ13 1102 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 MGAT5BQ3V5L5 792 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 SCARA5Q6ZMJ2 495 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 SV2AQ7L0J3 742 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 TMC8Q8IU68 726 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 FAM186BQ8IYM0 893 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 ADSSL1Q8N142 457 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 SLC44A3Q8N4M1 653 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 SHKBP1Q8TBC3 707 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 TMC2Q8TDI7 906 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 CCDC34Q96HJ3 373 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 ZNF512Q96ME7 567 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 KXD1Q9BQD3 176 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 SDCBP2Q9H190 292 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 SMYD3Q9H7B4 428 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 MMRN2Q9H8L6 949 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 CRTAC1Q9NQ79 661 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 RMND1Q9NWS8 449 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 MAFFQ9ULX9 164 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 R3HCC1Q9Y3T6 440 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 NUMBLQ9Y6R0 609 aa12.42□□□□□ -0.42
CCDC88C-208ENST00000554165 KIF20AO95235 890 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 HAPLN1P10915 354 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 COL9A1P20849 921 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 ALDH1A3P47895 512 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 GCLMP48507 274 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 EPHB3P54753 998 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 UBE2HP62256 183 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 TSPY1Q01534 308 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 SIGLEC14Q08ET2 396 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 TDGQ13569 410 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 TEAD2Q15562 447 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 NFIL3Q16649 462 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 DDR2Q16832 855 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 ZACNQ401N2 412 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 INTS6LQ5JSJ4 861 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 STXBP5Q5T5C0 1151 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 IER5LQ5T953 404 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 IQCEQ6IPM2 695 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 SPOPLQ6IQ16 392 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 KLHL10Q6JEL2 608 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 GAREM2Q75VX8 874 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 DNAJB7Q7Z6W7 309 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 DCP1BQ8IZD4 617 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 TMEM86AQ8N2M4 240 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 SYT15Q9BQS2 421 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 ACBD6Q9BR61 282 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 PLA2G2FQ9BZM2 168 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 DPEP3Q9H4B8 488 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 MUC6Q6W4X9 2439 aa12.41□□□□□ -0.42
CCDC88C-208ENST00000554165 A0A1W2PRU2 124 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 PRR33A8MZF0 331 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 PPP1R3GB7ZBB8 358 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 HLA-DRAP01903 254 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 WARSP23381 471 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms