RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CNTN2Q02246 1040 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 RNASELQ05823 741 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 PDIA2Q13087 525 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ORC1Q13415 861 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 MSS51Q4VC12 460 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 XKR3Q5GH77 459 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ANKRD22Q5VYY1 191 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ERICH1Q86X53 443 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 RELL1Q8IUW5 271 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 DENND1AQ8TEH3 1009 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 NSMCE1Q8WV22 266 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 TFAP2BQ92481 460 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 UTP4Q969X6 686 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CGRRF1Q99675 332 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CCDC77Q9BR77 488 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 MAK16Q9BXY0 300 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 PORCNQ9H237 461 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ARHGEF3Q9NR81 526 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 KLHL14Q9P2G3 628 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 IP6K2Q9UHH9 426 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 PHTF1Q9UMS5 762 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 SCINQ9Y6U3 715 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 MCM3APO60318 1980 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ADGRA2Q96PE1 1338 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 hCG_1818297A0A087WSY0 165 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 WDR91A4D1P6 747 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 SPATA31C2B4DYI2 1134 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 OATP04181 439 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CA4P22748 312 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 TARSP26639 723 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 MSH2P43246 934 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 BACE1P56817 501 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 GPX6P59796 221 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 TGFB2P61812 414 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 EN1Q05925 392 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 RIPK1Q13546 671 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CAPSQ13938 189 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 OASLQ15646 514 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 EAPPQ56P03 285 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 SYCP2LQ5T4T6 812 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 RNASEH2BQ5TBB1 312 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 GPAT2Q6NUI2 795 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 DCUN1D2Q6PH85 259 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 TRIM72Q6ZMU5 477 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CDR2LQ86X02 465 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 RCOR2Q8IZ40 523 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ANKRD35Q8N283 1001 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 BBOF1Q8ND07 529 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ERP27Q96DN0 273 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 VCPIP1Q96JH7 1222 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 L3MBTL3Q96JM7 780 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CFAP57Q96MR6 1250 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 TACO1Q9BSH4 297 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 DHX33Q9H6R0 707 aaKnown RBP7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ZWILCHQ9H900 591 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ETNK1Q9HBU6 452 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF302Q9NR11 478 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CNTN6Q9UQ52 1028 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 CHKBQ9Y259 395 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 NUMBLQ9Y6R0 609 aa7.91□□□□□ -1.14
LIMA1-213ENST00000552720 TCRBV7S3A2A0A539 114 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 GOLGA8RI6L899 631 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 TJP3O95049 919 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 CD48P09326 243 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 POTEJP0CG39 1038 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 ALADP13716 330 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 ARL2P36404 184 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 CDKN2BP42772 138 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 RAP1GAPP47736 663 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF132P52740 706 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 OSTNP61366 133 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 IL9RQ01113 521 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 FNBP1LQ5T0N5 605 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 RNF43Q68DV7 783 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 CIAPIN1Q6FI81 312 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 DNAJC24Q6P3W2 148 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 PPP1R21Q6ZMI0 780 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 KIAA0319LQ8IZA0 1049 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 ARFGAP1Q8N6T3 406 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 UBR7Q8N806 425 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 JOSD2Q8TAC2 188 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 KLF6Q99612 283 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-213ENST00000552720 WDR83Q9BRX9 315 aaKnown RBP7.9□□□□□ -1.14
LIMA1-213ENST00000552720 EBF2Q9HAK2 575 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 HACL1Q9UJ83 578 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 HAO1Q9UJM8 370 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 MAFBQ9Y5Q3 323 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-213ENST00000552720 CLUHO75153 1309 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 NFASCO94856 1347 aa7.9□□□□□ -1.14
LIMA1-213ENST00000552720 MAFGO15525 162 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 DKC1O60832 514 aaKnown RBP eCLIP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 DIAPH2O60879 1101 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 UNC5CO95185 931 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 ASS1P00966 412 aaKnown RBP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 ABHD2P08910 425 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 HMGB2P26583 209 aaKnown RBP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 IL1R2P27930 398 aa7.9□□□□□ -1.15
LIMA1-213ENST00000552720 GBP2P32456 591 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 RFC1P35251 1148 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-213ENST00000552720 NAMPTP43490 491 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms