RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 M0R296 226 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 TACC1O75410 805 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 VNN1O95497 513 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 BMP6P22004 513 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 NR2F2P24468 414 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 LMO2P25791 158 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 ATICP31939 592 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 TUFMP49411 452 aaKnown RBP12.26□□□□□ -0.45
YBX3-216ENST00000544622 BFSP1Q12934 665 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 ADAM9Q13443 819 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 EDRF1Q3B7T1 1238 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 ZACNQ401N2 412 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 TDRD10Q5VZ19 366 aaKnown RBP12.26□□□□□ -0.45
YBX3-216ENST00000544622 PARM1Q6UWI2 310 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 TMC8Q8IU68 726 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 ZC3H3Q8IXZ2 948 aaKnown RBP12.26□□□□□ -0.45
YBX3-216ENST00000544622 DCP1BQ8IZD4 617 aaKnown RBP12.26□□□□□ -0.45
YBX3-216ENST00000544622 ADSSL1Q8N142 457 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 TTC9BQ8N6N2 239 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 LEMD2Q8NC56 503 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 PSMG2Q969U7 264 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 TCEAL4Q96EI5 215 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 CORO1BQ9BR76 489 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 RPP25Q9BUL9 199 aaKnown RBP12.26□□□□□ -0.45
YBX3-216ENST00000544622 GDE1Q9NZC3 331 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 ASB3Q9Y575 518 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 NME7Q9Y5B8 376 aa12.26□□□□□ -0.45
YBX3-216ENST00000544622 TULP1O00294 542 aaPredicted RBP12.25□□□□□ -0.45
YBX3-216ENST00000544622 ZNF197O14709 1029 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 HCRTO43612 131 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 SOAT2O75908 522 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 HAPLN1P10915 354 aaPredicted RBP12.25□□□□□ -0.45
YBX3-216ENST00000544622 ATF6P18850 670 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 WARSP23381 471 aaKnown RBP12.25□□□□□ -0.45
YBX3-216ENST00000544622 MYL6P60660 151 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 MYL7Q01449 175 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 PLD1Q13393 1074 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 CFAP221Q4G0U5 840 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 INTS6LQ5JSJ4 861 aaKnown RBP12.25□□□□□ -0.45
YBX3-216ENST00000544622 IQCEQ6IPM2 695 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 CLEC17AQ6ZS10 378 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 SV2AQ7L0J3 742 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 DNAJB7Q7Z6W7 309 aaPredicted RBP12.25□□□□□ -0.45
YBX3-216ENST00000544622 ADGRF2Q8IZF7 708 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 HS6ST3Q8IZP7 471 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 GTF3C4Q9UKN8 822 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 FRMD4BQ9Y2L6 1034 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 MRPS23Q9Y3D9 190 aaKnown RBP12.25□□□□□ -0.45
YBX3-216ENST00000544622 NUMBLQ9Y6R0 609 aa12.25□□□□□ -0.45
YBX3-216ENST00000544622 MYBPHLA2RUH7 354 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 NARSO43776 548 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 SMC2O95347 1197 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 CEBPBP17676 345 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 COL9A1P20849 921 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 ACAT1P24752 427 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 RPL13P26373 211 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 PSMC2P35998 433 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 ALDH1A3P47895 512 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 PMS1P54277 932 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 EPHB3P54753 998 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 UBE2HP62256 183 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 NFE2Q16621 373 aaPredicted RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 WDR72Q3MJ13 1102 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 CYP4A22Q5TCH4 519 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 CEP135Q66GS9 1140 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 USP34Q70CQ2 3546 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 INTS8Q75QN2 995 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 GAREM2Q75VX8 874 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 PDZD4Q76G19 769 aaPredicted RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 ELMOD1Q8N336 334 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 SMARCE1Q969G3 411 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 SYAP1Q96A49 352 aaPredicted RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 PBXIP1Q96AQ6 731 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 FUBP3Q96I24 572 aaKnown RBP eCLIP12.24□□□□□ -0.45
YBX3-216ENST00000544622 ZSWIM3Q96MP5 696 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 MKNK1Q9BUB5 465 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 GTPBP4Q9BZE4 634 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 IL21Q9HBE4 155 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 ABCB6Q9NP58 842 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 WNT16Q9UBV4 365 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 HOOK1Q9UJC3 728 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 R3HCC1Q9Y3T6 440 aaKnown RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 ARIH1Q9Y4X5 557 aaPredicted RBP12.24□□□□□ -0.45
YBX3-216ENST00000544622 PCDHB5Q9Y5E4 795 aa12.24□□□□□ -0.45
YBX3-216ENST00000544622 ECI2O75521 394 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 SRFP11831 508 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 CD44P16070 742 aaKnown RBP12.23□□□□□ -0.45
YBX3-216ENST00000544622 HMGA1P17096 107 aaKnown RBP12.23□□□□□ -0.45
YBX3-216ENST00000544622 FCARP24071 287 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 PCSK1P29120 753 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 GNL1P36915 607 aaPredicted RBP12.23□□□□□ -0.45
YBX3-216ENST00000544622 ANP32AP39687 249 aaKnown RBP12.23□□□□□ -0.45
YBX3-216ENST00000544622 VAMP7P51809 220 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 CDR1P51861 262 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 TSPY1Q01534 308 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 PPP3CAQ08209 521 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 TRPC3Q13507 836 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 NCOA4Q13772 614 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 CCDC142Q17RM4 750 aa12.23□□□□□ -0.45
YBX3-216ENST00000544622 MGAT5BQ3V5L5 792 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms