RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CHORDC1Q9UHD1 332 aaPredicted RBP11.39□□□□□ -0.59
USP4-214ENST00000491791 ITGA11Q9UKX5 1188 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 NEU2Q9Y3R4 380 aa11.39□□□□□ -0.59
USP4-214ENST00000491791 A0A087WZ62 844 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 SMIM35A0A1B0GVV1 85 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 SIGLEC16A6NMB1 481 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 TLR3O15455 904 aaKnown RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 TSPAN1O60635 241 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 CILPO75339 1184 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 CALCAP01258 141 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 HARSP12081 509 aaKnown RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 P4HA1P13674 534 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 ARF4P18085 180 aaPredicted RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 ITIH2P19823 946 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 IVDP26440 423 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 POLR2BP30876 1174 aaKnown RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 CETN2P41208 172 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 RAD23BP54727 409 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 GYS2P54840 703 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 TFAMQ00059 246 aaKnown RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 CAV1Q03135 178 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 PTK6Q13882 451 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 SLMAPQ14BN4 828 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 STILQ15468 1287 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 GRIK4Q16099 956 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 TAZQ16635 292 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 DCAF4L1Q3SXM0 396 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 SCARA3Q6AZY7 606 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 AADACL2Q6P093 401 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 MMS22LQ6ZRQ5 1243 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 DPP9Q86TI2 863 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 DDX42Q86XP3 938 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP4-214ENST00000491791 CPNE8Q86YQ8 564 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 RELL1Q8IUW5 271 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 THNSL1Q8IYQ7 743 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 ATL2Q8NHH9 583 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 TFAP2BQ92481 460 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 USP6NLQ92738 828 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 ARL8AQ96BM9 186 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 C18orf8Q96DM3 657 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 FDXACB1Q9BRP7 624 aaPredicted RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 C11orf70Q9BRQ4 267 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 TRIM51Q9BSJ1 452 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 TRIM7Q9C029 511 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 ADAMTS10Q9H324 1103 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 PABPC3Q9H361 631 aaKnown RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 GNEQ9Y223 722 aaKnown RBP11.38□□□□□ -0.59
USP4-214ENST00000491791 PLAAQ9Y263 795 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 RALGAPA2Q2PPJ7 1873 aa11.38□□□□□ -0.59
USP4-214ENST00000491791 NRCAMQ92823 1304 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 EVPLQ92817 2033 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 TCRBV7S2A1N4TA0A589 114 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 HAS3O00219 553 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 TNPO2O14787 897 aaKnown RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 ECEL1O95672 775 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 F2P00734 622 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 HMGCRP04035 888 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 CXCL8P10145 99 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 VDRP11473 427 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 RARGP13631 454 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 AXLP30530 894 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 HOXC8P31273 242 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 RPL21P46778 160 aaKnown RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 TAS2R40P59535 323 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 ADAM17P78536 824 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 RBP5P82980 135 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 DHX9Q08211 1270 aaKnown RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 ZNF844Q08AG5 666 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 ZNF268Q14587 947 aaPredicted RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 ZBTB6Q15916 424 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 CNGA2Q16280 664 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 SGO2Q562F6 1265 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 RHBDF2Q6PJF5 856 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 ERICH1Q86X53 443 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 CEP120Q8N960 986 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 PXYLP1Q8TE99 480 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 RBM41Q96IZ5 413 aaKnown RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 ACAP3Q96P50 834 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 FRMD8P1Q9BZ68 369 aaPredicted RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 FOXP3Q9BZS1 431 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 DCLK3Q9C098 648 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 EPB41L4BQ9H329 900 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 DDX56Q9NY93 547 aaKnown RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 MTRF1LQ9UGC7 380 aaKnown RBP11.37□□□□□ -0.59
USP4-214ENST00000491791 CEP83Q9Y592 693 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 MGAMO43451 1857 aa11.37□□□□□ -0.59
USP4-214ENST00000491791 TP73O15350 636 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 GPR32O75388 356 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 IVLP07476 585 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 NFICP08651 508 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 MYZAPP0CAP1 466 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 FLT3P36888 993 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 LMAN1P49257 510 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 FLT3LGP49771 235 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 LMNB2Q03252 620 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 ZNF252P-AS1Q0IIN9 211 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 MAP2K5Q13163 448 aa11.36□□□□□ -0.59
USP4-214ENST00000491791 GJC2Q5T442 439 aaPredicted RBP11.36□□□□□ -0.59
USP4-214ENST00000491791 OLFML2BQ68BL8 750 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms