RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 HS6ST3Q8IZP7 471 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 TOP6BLQ8N6T0 577 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 ITFG1Q8TB96 612 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 FAM200AQ8TCP9 573 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 DHTKD1Q96HY7 919 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-213ENST00000481019 NECTIN4Q96NY8 510 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 PI4K2AQ9BTU6 479 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 FUCA2Q9BTY2 467 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 RHOBTB2Q9BYZ6 727 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 SMOC2Q9H3U7 446 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 EPHX3Q9H6B9 360 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 SMYD3Q9H7B4 428 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 MMRN2Q9H8L6 949 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 DDX43Q9NXZ2 648 aaKnown RBP13.12□□□□□ -0.31
PTPRF-213ENST00000481019 CEP72Q9P209 647 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 DSEQ9UL01 958 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 DOCK8Q8NF50 2099 aa13.12□□□□□ -0.31
PTPRF-213ENST00000481019 BECN2A8MW95 431 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 PRRG1O14668 218 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 CETN3O15182 167 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 PHACTR2O75167 634 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 HLA-DRAP01903 254 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 RPL13P26373 211 aaKnown RBP13.11□□□□□ -0.31
PTPRF-213ENST00000481019 HOXA9P31269 272 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 CCR2P41597 374 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 GPR15P49685 360 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 ZNF165P49910 485 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 CDH8P55286 799 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 TWF1Q12792 350 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 MYO1EQ12965 1108 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 SLC5A9Q2M3M2 681 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 WDR72Q3MJ13 1102 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 SCARA5Q6ZMJ2 495 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 CCDC149Q6ZUS6 474 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 STKLD1Q8NE28 680 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 TAS1R2Q8TE23 839 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 SEMA4DQ92854 862 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 TCEAL4Q96EI5 215 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 BPIFA3Q9BQP9 254 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 DNAJC25Q9H1X3 360 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 PIDD1Q9HB75 910 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 APOBEC3GQ9HC16 384 aaKnown RBP13.11□□□□□ -0.31
PTPRF-213ENST00000481019 NXF1Q9UBU9 619 aaKnown RBP13.11□□□□□ -0.31
PTPRF-213ENST00000481019 DPP7Q9UHL4 492 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 MUTYHQ9UIF7 546 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 YIPF1Q9Y548 306 aa13.11□□□□□ -0.31
PTPRF-213ENST00000481019 MYBPHLA2RUH7 354 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 GOLGA6L19H0YKK7 550 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 PSMA7O14818 248 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 STAU1O95793 577 aaKnown RBP13.1□□□□□ -0.31
PTPRF-213ENST00000481019 ASGR2P07307 311 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 POU2F2P09086 479 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 PDGFRBP09619 1106 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 WARSP23381 471 aaKnown RBP13.1□□□□□ -0.31
PTPRF-213ENST00000481019 ELF1P32519 619 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 PSMC1P62191 440 aaKnown RBP13.1□□□□□ -0.31
PTPRF-213ENST00000481019 FKBP3Q00688 224 aaKnown RBP13.1□□□□□ -0.31
PTPRF-213ENST00000481019 LRRC63Q05C16 580 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 TRPC3Q13507 836 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 ANO6Q4KMQ2 910 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 INTS6LQ5JSJ4 861 aaKnown RBP13.1□□□□□ -0.31
PTPRF-213ENST00000481019 CYP26C1Q6V0L0 522 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 INTS8Q75QN2 995 aaKnown RBP13.1□□□□□ -0.31
PTPRF-213ENST00000481019 GET4Q7L5D6 327 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-213ENST00000481019 THEM5Q8N1Q8 247 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 TMEM86AQ8N2M4 240 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 GPR152Q8TDT2 470 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 MMS19Q96T76 1030 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 TSG101Q99816 390 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 LRRC3Q9BY71 257 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 DPEP3Q9H4B8 488 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 CRTAC1Q9NQ79 661 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 LIMD1Q9UGP4 676 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 GTF3C4Q9UKN8 822 aa13.1□□□□□ -0.31
PTPRF-213ENST00000481019 IKBKBO14920 756 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 SLC16A3O15427 465 aaKnown RBP13.09□□□□□ -0.31
PTPRF-213ENST00000481019 MOSPD3O75425 235 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 RHOP08100 348 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 EPB41P11171 864 aaKnown RBP13.09□□□□□ -0.31
PTPRF-213ENST00000481019 KRT13P13646 458 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ATF6P18850 670 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 FSHRP23945 695 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ERCC5P28715 1186 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ATICP31939 592 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 AP3M2P53677 418 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ZNF699Q32M78 642 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 CBWD6Q4V339 395 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 CBWD3Q5JTY5 395 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 PRSS36Q5K4E3 855 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 CBWD5Q5RIA9 395 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 SDHAF4Q5VUM1 108 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ELMSAN1Q6PJG2 1045 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 RSAD2Q8WXG1 361 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ING5Q8WYH8 240 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ACBD6Q9BR61 282 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 CORO1BQ9BR76 489 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 MKNK1Q9BUB5 465 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 OXCT2Q9BYC2 517 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-213ENST00000481019 VRTNQ9H8Y1 702 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 ZNF334Q9HCZ1 680 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms