RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PGM3O95394 542 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 ADRB2P07550 413 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 DLDP09622 509 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 FAM200BP0CF97 657 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 LSAMPQ13449 338 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 DDB1Q16531 1140 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 TREML1Q86YW5 311 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 TMPRSS6Q8IU80 811 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC9A9Q8IVB4 645 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 LINC00116Q8NCU8 138 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 SMC1BQ8NDV3 1235 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 WDR18Q9BV38 432 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 PHACTR1Q9C0D0 580 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 ATRNL1Q5VV63 1379 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 MEI4A8MW99 385 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 ADRA2BP18089 450 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 LCA5Q86VQ0 697 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 PALM2Q8IXS6 379 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 ULK2Q8IYT8 1036 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 DAW1Q8N136 415 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 NAT14Q8WUY8 206 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 PPP2R3CQ969Q6 453 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 LXNQ9BS40 222 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 VPS11Q9H270 941 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 CHMP2BQ9UQN3 213 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 MAST2Q6P0Q8 1798 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 LIASO43766 372 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 ALDH18A1P54886 795 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 GTF2IP78347 998 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 MED21Q13503 144 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 BBS9Q3SYG4 887 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 PABPC1LQ4VXU2 614 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 LPCAT4Q643R3 524 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 ZNF276Q8N554 614 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 DDX1Q92499 740 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 RILPQ96NA2 401 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 FOXP3Q9BZS1 431 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 DDX43Q9NXZ2 648 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC7A8Q9UHI5 535 aa19.73■□□□□ 0.75
CCDC88B-207ENST00000479965 UBE4BO95155 1302 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 CCDC195A0A1B0GUA6 201 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 E5RJQ4 531 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 ALOX15BO15296 676 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 GRIN3BO60391 1043 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 PROSCO94903 275 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 GLRA2P23416 452 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 DYNLT1P63172 113 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 NFX1Q12986 1120 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 SYCP2LQ5T4T6 812 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 SDCCAG8Q86SQ7 713 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 NME8Q8N427 588 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 SHKBP1Q8TBC3 707 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 RABGEF1Q9UJ41 708 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 P4HA2O15460 535 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 FOSP01100 380 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 VAV1P15498 845 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 SCNN1DP51172 638 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 PADI6Q6TGC4 694 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 GSTCDQ8NEC7 633 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 HELQQ8TDG4 1101 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 IKBKGQ9Y6K9 419 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 SPATA31A5Q5VU36 1347 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 SPATA31A6Q5VVP1 1343 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 SPATA31A7Q8IWB4 1347 aa19.72■□□□□ 0.75
CCDC88B-207ENST00000479965 MYH11P35749 1972 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 TCF4P15884 667 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 PHBP35232 272 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 GPSM2P81274 684 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 FAM182AQ5T1J6 154 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 PRPF39Q86UA1 669 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 NLRX1Q86UT6 975 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 ARID3BQ8IVW6 561 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 ACCSQ96QU6 501 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 IWS1Q96ST2 819 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 IQCGQ9H095 443 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 ARHGEF4Q9NR80 690 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC4A7Q9Y6M7 1214 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 SPECC1L-ADORA2AF8WAN1 911 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 CYP3A4P08684 503 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 PRELPP51888 382 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 KRT72Q14CN4 511 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 KRT39Q6A163 491 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 CCDC174Q6PII3 467 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 BANPQ8N9N5 519 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 OR6Y1Q8NGX8 325 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 CCDC124Q96CT7 223 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 MECRQ9BV79 373 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 TMEM206Q9H813 350 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 SAE1Q9UBE0 346 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 CLUHO75153 1309 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 PLIN4Q96Q06 1357 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 TM9SF1O15321 606 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 KRT1P04264 644 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 ASPHQ12797 758 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 TCP10Q12799 353 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 TRMT5Q32P41 509 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 EFHC2Q5JST6 749 aa19.71■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC26A7Q8TE54 656 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms