RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	FAM193B	Q96PV7	902 aa	Predicted RBP	11.93	□□□□□ -0.5
APTX-223	ENST00000479656	LPIN3	Q9BQK8	851 aa		11.93	□□□□□ -0.5
APTX-223	ENST00000479656	DPEP3	Q9H4B8	488 aa		11.93	□□□□□ -0.5
APTX-223	ENST00000479656	DNAJB4	Q9UDY4	337 aa		11.93	□□□□□ -0.5
APTX-223	ENST00000479656	PCDHGC3	Q9UN70	934 aa		11.93	□□□□□ -0.5
APTX-223	ENST00000479656	TDRD15	B5MCY1	1934 aa	Known RBP	11.93	□□□□□ -0.5
APTX-223	ENST00000479656	BTNL10	A8MVZ5	291 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	MED7	O43513	233 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	ITGB1	P05556	798 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	ACR	P10323	421 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	WARS	P23381	471 aa	Known RBP	11.92	□□□□□ -0.5
APTX-223	ENST00000479656	CASQ1	P31415	396 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	NOP2	P46087	812 aa	Known RBP	11.92	□□□□□ -0.5
APTX-223	ENST00000479656	OR1G1	P47890	313 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	AARS	P49588	968 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
APTX-223	ENST00000479656	NOMO3	P69849	1222 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	GPC5	P78333	572 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	DSC1	Q08554	894 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	CNGA2	Q16280	664 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	C2CD6	Q53TS8	623 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	SGO2	Q562F6	1265 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	DENND1B	Q6P3S1	775 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	NPAS4	Q8IUM7	802 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	TMEM199	Q8N511	208 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	WDTC1	Q8N5D0	677 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	RNF10	Q8N5U6	811 aa	Known RBP	11.92	□□□□□ -0.5
APTX-223	ENST00000479656	KIF18A	Q8NI77	898 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	MYO1A	Q9UBC5	1043 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	CHORDC1	Q9UHD1	332 aa	Predicted RBP	11.92	□□□□□ -0.5
APTX-223	ENST00000479656	KIAA1257	Q9ULG3	409 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	STXBP5L	Q9Y2K9	1186 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	CAPN6	Q9Y6Q1	641 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	ATP8B3	O60423	1300 aa		11.92	□□□□□ -0.5
APTX-223	ENST00000479656	TBKBP1	A7MCY6	615 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	FAM163B	P0C2L3	166 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	NSF	P46459	744 aa	Known RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	CENPC	Q03188	943 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	PHLDB2	Q86SQ0	1253 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	MCOLN2	Q8IZK6	566 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	CRYBG2	Q8N1P7	616 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	SLC35G2	Q8TBE7	412 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	NOX5	Q96PH1	765 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	NRDE2	Q9H7Z3	1164 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	OSGEP	Q9NPF4	335 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	MKI67	P46013	3256 aa	Known RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656		O00370	1275 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	GABRD	O14764	452 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	ATMIN	O43313	823 aa	Predicted RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	HOXA2	O43364	376 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	ATP2C2	O75185	946 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	MICAL2	O94851	1124 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	KIF4A	O95239	1232 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	ACAT1	P24752	427 aa	Known RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	TMEM35B	Q8NCS4	154 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	C1orf131	Q8NDD1	294 aa	Known RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	UBA3	Q8TBC4	463 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	RSPH1	Q8WYR4	309 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	ZNF653	Q96CK0	615 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	LHX5	Q9H2C1	402 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	FAM49B	Q9NUQ9	324 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	RNF216	Q9NWF9	866 aa	Predicted RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	HCST	Q9UBK5	93 aa		11.91	□□□□□ -0.5
APTX-223	ENST00000479656	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	PRG3	Q9Y2Y8	225 aa	Predicted RBP	11.91	□□□□□ -0.5
APTX-223	ENST00000479656	TTC3	P53804	2025 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656		A0A0A6YYK5	440 aa	Predicted RBP	11.9	□□□□□ -0.5
APTX-223	ENST00000479656	NRP1	O14786	923 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	ALDH2	P05091	517 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	LCLAT1	Q6UWP7	414 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	MON1B	Q7L1V2	547 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	TMCO2	Q7Z6W1	182 aa	Predicted RBP	11.9	□□□□□ -0.5
APTX-223	ENST00000479656	TRIM58	Q8NG06	486 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	C11orf70	Q9BRQ4	267 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	ZNF518B	Q9C0D4	1074 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	DDX43	Q9NXZ2	648 aa	Known RBP	11.9	□□□□□ -0.5
APTX-223	ENST00000479656	ADAM22	Q9P0K1	906 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	CTTNBP2NL	Q9P2B4	639 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	CNOT8	Q9UFF9	292 aa	Known RBP	11.9	□□□□□ -0.5
APTX-223	ENST00000479656	TSPAN16	Q9UKR8	245 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	COG5	Q9UP83	839 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656	CEP83	Q9Y592	693 aa		11.9	□□□□□ -0.5
APTX-223	ENST00000479656		M0QYV0	167 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656		M0QZQ0	153 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	ENC1	O14682	589 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	TADA2A	O75478	443 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	PALM	O75781	387 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	DGKI	O75912	1065 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	LSM8	O95777	96 aa	Known RBP	11.89	□□□□□ -0.51
APTX-223	ENST00000479656	ODC1	P11926	461 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	PAX3	P23760	479 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	CDH5	P33151	784 aa	Predicted RBP	11.89	□□□□□ -0.51
APTX-223	ENST00000479656	LHX1	P48742	406 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	CDR1	P51861	262 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	PSMC1	P62191	440 aa	Known RBP	11.89	□□□□□ -0.51
APTX-223	ENST00000479656	PTP4A2	Q12974	167 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	KIAA0319	Q5VV43	1072 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	FAM117B	Q6P1L5	589 aa		11.89	□□□□□ -0.51
APTX-223	ENST00000479656	LLGL2	Q6P1M3	1020 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms