RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CCDC82Q8N4S0 544 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 TRIML1Q8N9V2 468 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 TXNDC5Q8NBS9 432 aaKnown RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 SPRYD3Q8NCJ5 442 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 ASAP3Q8TDY4 903 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 RHBDD1Q8TEB9 315 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 PSPC1Q8WXF1 523 aaKnown RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 BAP1Q92560 729 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 SPACA7Q96KW9 195 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 ACAP3Q96P50 834 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 PGLYRP2Q96PD5 576 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 PPP1R10Q96QC0 940 aaKnown RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 SLC4A5Q9BY07 1137 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 ATXN3LQ9H3M9 355 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 ZNF768Q9H5H4 540 aaKnown RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 TASP1Q9H6P5 420 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 GAREM1Q9H706 876 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 CNNM2Q9H8M5 875 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 CD248Q9HCU0 757 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 STARD5Q9NSY2 213 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 HCN2Q9UL51 889 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 TPCN1Q9ULQ1 816 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 USP20Q9Y2K6 914 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 AK5Q9Y6K8 562 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 CNTNAP5Q8WYK1 1306 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 CSMD2Q7Z408 3487 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 TCRBV21S2A2A0A5A6 115 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 DDX11L8A8MPP1 907 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 INO80B-WBP1J3KQ70 363 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 ZBTB39O15060 712 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 AP5Z1O43299 807 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 TNFSF14O43557 240 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 PSMD10O75832 226 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 KLF8O95600 359 aaPredicted RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 FOSP01100 380 aaPredicted RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 GABRG2P18507 467 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 NMT1P30419 496 aaKnown RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 CIITAP33076 1130 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 KIR2DL1P43626 348 aaPredicted RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 CDR1P51861 262 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 TMPRSS3P57727 454 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 TLE1Q04724 770 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 FUT2Q10981 343 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 DUSP4Q13115 394 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 CAPSQ13938 189 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 PTPAQ15257 358 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 IMMTQ16891 758 aaKnown RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 HLA-BQ31612 363 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 EML3Q32P44 896 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 KRTAP21-3Q3LHN1 58 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 LINC00303Q3SY05 128 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 C6orf118Q5T5N4 469 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 SLC27A1Q6PCB7 646 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 ATG14Q6ZNE5 492 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 RABEPKQ7Z6M1 372 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 CATIPQ7Z7H3 387 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 CMTM8Q8IZV2 173 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 SLC5A5Q92911 643 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 PSMG2Q969U7 264 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 LIN37Q96GY3 246 aaPredicted RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 ZNF419Q96HQ0 510 aaPredicted RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 LGMNQ99538 433 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 MAP3K14Q99558 947 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 KIF2CQ99661 725 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 CDC6Q99741 560 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 DSCC1Q9BVC3 393 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 TRIM6Q9C030 488 aaPredicted RBP5.3□□□□□ -1.56
USP4-209ENST00000475873 NRSN2Q9GZP1 204 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 CALCOCO1Q9P1Z2 691 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 DDX19BQ9UMR2 479 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 SLC27A5Q9Y2P5 690 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 WNT6Q9Y6F9 365 aa5.3□□□□□ -1.56
USP4-209ENST00000475873 AKAP9Q99996 3911 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 PDZD2O15018 2839 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 ANO9A1A5B4 782 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 EML1O00423 815 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 FLRT2O43155 660 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 DDAH1O94760 285 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 CALM1P0DP23 149 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 CALM2P0DP24 149 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 CALM3P0DP25 149 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 JUPP14923 745 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 ATF6P18850 670 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 TIE1P35590 1138 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 USP11P51784 963 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 ADCY7P51828 1080 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 PDE1AP54750 535 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 NAPAP54920 295 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 SETQ01105 290 aaPredicted RBP5.29□□□□□ -1.56
USP4-209ENST00000475873 VAC14Q08AM6 782 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 AP3B2Q13367 1082 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 EMC2Q15006 297 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 CTXN3Q4LDR2 81 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 C20orf194Q5TEA3 1177 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 HES3Q5TGS1 186 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 EEF1DP3Q658K8 133 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 FBXL19Q6PCT2 694 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 TMTC3Q6ZXV5 915 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 C12orf40Q86WS4 652 aa5.29□□□□□ -1.56
USP4-209ENST00000475873 NOSTRINQ8IVI9 506 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms