RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 POLNQ7Z5Q5 900 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 APBB1IPQ7Z5R6 666 aaPredicted RBP10.39□□□□□ -0.75
USP39-214ENST00000474572 PHLDB2Q86SQ0 1253 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 ERICH1Q86X53 443 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 FBXO25Q8TCJ0 367 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 GRK7Q8WTQ7 553 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 TMEM176AQ96HP8 235 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 RBM41Q96IZ5 413 aaKnown RBP10.39□□□□□ -0.75
USP39-214ENST00000474572 SNX27Q96L92 541 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 ATP6V1G3Q96LB4 118 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 TSPAN18Q96SJ8 248 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 GCOM2Q9BZD3 368 aaPredicted RBP10.39□□□□□ -0.75
USP39-214ENST00000474572 OSBPL8Q9BZF1 889 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 CHST7Q9NS84 486 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 SETD4Q9NVD3 440 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 FLRT1Q9NZU1 646 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 NXF1Q9UBU9 619 aaKnown RBP10.39□□□□□ -0.75
USP39-214ENST00000474572 CPA4Q9UI42 421 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 CYTH4Q9UIA0 394 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 KIAA1257Q9ULG3 409 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 BARX2Q9UMQ3 279 aaPredicted RBP10.39□□□□□ -0.75
USP39-214ENST00000474572 SNX24Q9Y343 169 aa10.39□□□□□ -0.75
USP39-214ENST00000474572 A6NNZ2 444 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 TP73O15350 636 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 MICAL2O94851 1124 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 HMGCRP04035 888 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 RALAP11233 206 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 DARSP14868 501 aaKnown RBP10.38□□□□□ -0.75
USP39-214ENST00000474572 IVDP26440 423 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 KCNJ1P48048 391 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 PSEN2P49810 448 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 KRT17Q04695 432 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 DHX9Q08211 1270 aaKnown RBP10.38□□□□□ -0.75
USP39-214ENST00000474572 HIC1Q14526 733 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 MFSD10Q14728 455 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 STILQ15468 1287 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 TAZQ16635 292 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 TUBB8Q3ZCM7 444 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 XKR4Q5GH76 650 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 ALKAL1Q6UXT8 129 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 RUFY4Q6ZNE9 571 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 ANKS1BQ7Z6G8 1248 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 TLK2Q86UE8 772 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 CCDC105Q8IYK2 499 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 RCOR2Q8IZ40 523 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 TMEM130Q8N3G9 435 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 LRRC52Q8N7C0 313 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 C1orf54Q8WWF1 131 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 MCRS1Q96EZ8 462 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 HPDLQ96IR7 371 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 MCEEQ96PE7 176 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 SLITRK1Q96PX8 696 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 PPP1R16BQ96T49 567 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 TMEM109Q9BVC6 243 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 TRIM31Q9BZY9 425 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 DPP3Q9NY33 737 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 DDX56Q9NY93 547 aaKnown RBP10.38□□□□□ -0.75
USP39-214ENST00000474572 CNTN3Q9P232 1028 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 MTRF1LQ9UGC7 380 aaKnown RBP10.38□□□□□ -0.75
USP39-214ENST00000474572 HMGXB4Q9UGU5 601 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 FEZ2Q9UHY8 353 aaPredicted RBP10.38□□□□□ -0.75
USP39-214ENST00000474572 AGAP1Q9UPQ3 857 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 EFR3BQ9Y2G0 817 aa10.38□□□□□ -0.75
USP39-214ENST00000474572 R3HDM2Q9Y2K5 976 aaKnown RBP10.38□□□□□ -0.75
USP39-214ENST00000474572 GRIN2DO15399 1336 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 hCG_1818297A0A087WSY0 165 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 DYNC1LI2O43237 492 aaPredicted RBP10.37□□□□□ -0.75
USP39-214ENST00000474572 NPTXRO95502 500 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 SLC10A3P09131 477 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 CYP2C9P11712 490 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 RARGP13631 454 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 CD19P15391 556 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 CAPN2P17655 700 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 SCN1AP35498 2009 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 GPD2P43304 727 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 CPT1AP50416 773 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 PMS2P54278 862 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 HUNKP57058 714 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 SLC25A11Q02978 314 aaKnown RBP10.37□□□□□ -0.75
USP39-214ENST00000474572 CAV1Q03135 178 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 NFX1Q12986 1120 aaKnown RBP10.37□□□□□ -0.75
USP39-214ENST00000474572 ACAP1Q15027 740 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 KIZQ2M2Z5 673 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 CEP85LQ5SZL2 805 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 DAB2IPQ5VWQ8 1189 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 NOTUMQ6P988 496 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 XYLT1Q86Y38 959 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 ATL2Q8NHH9 583 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 JOSD2Q8TAC2 188 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 UBLCP1Q8WVY7 318 aaPredicted RBP10.37□□□□□ -0.75
USP39-214ENST00000474572 SOCS4Q8WXH5 440 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 ZBTB9Q96C00 473 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 KIF12Q96FN5 646 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 CPXM1Q96SM3 734 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 APBA2Q99767 749 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 PABPC3Q9H361 631 aaKnown RBP10.37□□□□□ -0.75
USP39-214ENST00000474572 CDHR5Q9HBB8 845 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 TJP2Q9UDY2 1190 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 GJD2Q9UKL4 321 aa10.37□□□□□ -0.75
USP39-214ENST00000474572 TRIP12Q14669 1992 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms