RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 A8MXQ7 604 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 PES1O00541 588 aaKnown RBP21.16■□□□□ 0.98
COL9A3-204ENST00000463487 HNRNPA1P09651 372 aaKnown RBP eCLIP21.16■□□□□ 0.98
COL9A3-204ENST00000463487 HOXA9P31269 272 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 YWHAEP62258 255 aaKnown RBP21.16■□□□□ 0.98
COL9A3-204ENST00000463487 TPM4P67936 248 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 DLX2Q07687 328 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-204ENST00000463487 ADCY1Q08828 1119 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 SMAD4Q13485 552 aaKnown RBP21.16■□□□□ 0.98
COL9A3-204ENST00000463487 SLC39A12Q504Y0 691 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 TCP11X2Q5H9J9 407 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 INTS6LQ5JSJ4 861 aaKnown RBP21.16■□□□□ 0.98
COL9A3-204ENST00000463487 IRF2BP1Q8IU81 584 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 AOPEPQ8N6M6 819 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 SMRP1Q8NCR6 262 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 CMASQ8NFW8 434 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-204ENST00000463487 KBTBD7Q8WVZ9 684 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 TNIP3Q96KP6 325 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 RIPOR3Q96MK2 946 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 SMYD3Q9H7B4 428 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 HSFX1Q9UBD0 423 aa21.16■□□□□ 0.98
COL9A3-204ENST00000463487 XYLBO75191 536 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 ZMYND10O75800 440 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 OR4Q2P0C623 313 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 CDK11BP21127 795 aaKnown RBP21.15■□□□□ 0.98
COL9A3-204ENST00000463487 TBXAS1P24557 533 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-204ENST00000463487 ASPAP45381 313 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 PLD1Q13393 1074 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 CLUL1Q15846 466 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 HSP90AA4PQ58FG1 418 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 RARS2Q5T160 578 aaKnown RBP21.15■□□□□ 0.98
COL9A3-204ENST00000463487 SPOPLQ6IQ16 392 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 RNF19BQ6ZMZ0 732 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 C4orf50Q6ZRC1 276 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 TCEAL8Q8IYN2 117 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 ELMOD1Q8N336 334 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 SLC7A14Q8TBB6 771 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 SPPL2BQ8TCT7 592 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 SEMA4DQ92854 862 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 NT5C1BQ96P26 610 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 RTP3Q9BQQ7 232 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 SYT15Q9BQS2 421 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 MRPL45Q9BRJ2 306 aaKnown RBP21.15■□□□□ 0.98
COL9A3-204ENST00000463487 BCO2Q9BYV7 579 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 PIDD1Q9HB75 910 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 PRDM6Q9NQX0 595 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.15■□□□□ 0.98
COL9A3-204ENST00000463487 FANCLQ9NW38 375 aa21.15■□□□□ 0.98
COL9A3-204ENST00000463487 MTCL1Q9Y4B5 1905 aaKnown RBP21.14■□□□□ 0.98
COL9A3-204ENST00000463487 CCDC195A0A1B0GUA6 201 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 GTPBP10A4D1E9 387 aaKnown RBP21.14■□□□□ 0.97
COL9A3-204ENST00000463487 LRG1P02750 347 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 ACAT1P24752 427 aaKnown RBP21.14■□□□□ 0.97
COL9A3-204ENST00000463487 TUFMP49411 452 aaKnown RBP21.14■□□□□ 0.97
COL9A3-204ENST00000463487 CDKAL1Q5VV42 579 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 GBP6Q6ZN66 633 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 UNC93AQ86WB7 457 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 FAM81BQ96LP2 452 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 NECTIN4Q96NY8 510 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 PGLYRP2Q96PD5 576 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 FUCA2Q9BTY2 467 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 ADAM7Q9H2U9 754 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 NDST4Q9H3R1 872 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 GCNT4Q9P109 453 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 PCDHB5Q9Y5E4 795 aa21.14■□□□□ 0.97
COL9A3-204ENST00000463487 MTMR11A4FU01 709 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 PDGFRBP09619 1106 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 MTHFRP42898 656 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 RAP1GAPP47736 663 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 TFF2Q03403 129 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 VWA3BQ502W6 1294 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 ATAT1Q5SQI0 421 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 PTCRAQ6ISU1 281 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-204ENST00000463487 SYCE2Q6PIF2 218 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 TMC5Q6UXY8 1006 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 OSTM1Q86WC4 334 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 SPATA2LQ8IUW3 424 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-204ENST00000463487 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.13■□□□□ 0.97
COL9A3-204ENST00000463487 TMEM209Q96SK2 561 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 RHOBTB2Q9BYZ6 727 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 APOBEC3GQ9HC16 384 aaKnown RBP21.13■□□□□ 0.97
COL9A3-204ENST00000463487 ABCB6Q9NP58 842 aa21.13■□□□□ 0.97
COL9A3-204ENST00000463487 ABI2Q9NYB9 513 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-204ENST00000463487 ATP8B3O60423 1300 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 POU2F2P09086 479 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 WEE2P0C1S8 567 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 ALDH1A3P47895 512 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 CDH8P55286 799 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 EXOC3L4Q17RC7 722 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 FKBP15Q5T1M5 1219 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 B3GALNT2Q8NCR0 500 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 EHBP1Q8NDI1 1231 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 SMG7Q92540 1137 aaKnown RBP21.12■□□□□ 0.97
COL9A3-204ENST00000463487 FUBP3Q96I24 572 aaKnown RBP eCLIP21.12■□□□□ 0.97
COL9A3-204ENST00000463487 ASB2Q96Q27 587 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 PRKD2Q9BZL6 878 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 INTS2Q9H0H0 1204 aaKnown RBP21.12■□□□□ 0.97
COL9A3-204ENST00000463487 INSL5Q9Y5Q6 135 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 BRWD1Q9NSI6 2320 aa21.12■□□□□ 0.97
COL9A3-204ENST00000463487 MBTPS2O43462 519 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms