RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	RPF1	Q9H9Y2	349 aa	Known RBP	12.09	□□□□□ -0.47
PTPN7-204	ENST00000462815	C2CD2	Q9Y426	696 aa		12.09	□□□□□ -0.47
PTPN7-204	ENST00000462815	KIAA1549L	Q6ZVL6	1849 aa		12.09	□□□□□ -0.47
PTPN7-204	ENST00000462815	MAP1B	P46821	2468 aa	Known RBP	12.09	□□□□□ -0.47
PTPN7-204	ENST00000462815	EML5	Q05BV3	1969 aa		12.09	□□□□□ -0.47
PTPN7-204	ENST00000462815	GREB1	Q4ZG55	1949 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	TM4SF5	O14894	197 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	EXTL3	O43909	919 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	TRAK2	O60296	914 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	TADA3	O75528	432 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	PPP1R37	O75864	691 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	F11	P03951	625 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	HAPLN1	P10915	354 aa	Predicted RBP	12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	NMT1	P30419	496 aa	Known RBP	12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	ADSS	P30520	456 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	MATR3	P43243	847 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	MCM2	P49736	904 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	CDR1	P51861	262 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	MCM6	Q14566	821 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	TMEM132D	Q14C87	1099 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	FSTL4	Q6MZW2	842 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	ITIH5	Q86UX2	942 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	SYNPO	Q8N3V7	929 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	CXorf38	Q8TB03	319 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	AK8	Q96MA6	479 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	ASB7	Q9H672	318 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	PARVG	Q9HBI0	331 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	TMLHE	Q9NVH6	421 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	RAB23	Q9ULC3	237 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	CCL26	Q9Y258	94 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	CEP295	Q9C0D2	2601 aa		12.08	□□□□□ -0.48
PTPN7-204	ENST00000462815	PLCG1	P19174	1290 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	RAP1GAP	P47736	663 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	TUFM	P49411	452 aa	Known RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	ACOT2	P49753	483 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	PLCB2	Q00722	1185 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	POU5F1	Q01860	360 aa	Known RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	KARS	Q15046	597 aa	Known RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	TMEM196	Q5HYL7	178 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	PPM1J	Q5JR12	505 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	WSCD1	Q658N2	575 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	HEATR6	Q6AI08	1181 aa	Known RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	CMTM8	Q8IZV2	173 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	MYCT1	Q8N699	235 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	C2orf15	Q8WU43	125 aa	Known RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	RAD54L	Q92698	747 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	EZH1	Q92800	747 aa	Predicted RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	USP13	Q92995	863 aa	Predicted RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	PKMYT1	Q99640	499 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	SEPT5	Q99719	369 aa	Predicted RBP	12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	RXFP3	Q9NSD7	469 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	SDK1	Q7Z5N4	2213 aa		12.07	□□□□□ -0.48
PTPN7-204	ENST00000462815	MYO16	Q9Y6X6	1858 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	CCDC163	A0A0D9SF12	145 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	CYB561D2	O14569	222 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	TRDMT1	O14717	391 aa	Known RBP	12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	GJB2	P29033	226 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	CDC25C	P30307	473 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	GPR15	P49685	360 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	LIMK1	P53667	647 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	NLRP12	P59046	1061 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	ITPRIPL2	Q3MIP1	535 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	MGAT5B	Q3V5L5	792 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	ARHGAP15	Q53QZ3	475 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	PLA2G2C	Q5R387	149 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	NAIF1	Q69YI7	327 aa	Predicted RBP	12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	TRIM68	Q6AZZ1	485 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	MCTP1	Q6DN14	999 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	ARMCX5	Q6P1M9	558 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	STKLD1	Q8NE28	680 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZSWIM2	Q8NEG5	633 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	SPPL2B	Q8TCT7	592 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	GIPC2	Q8TF65	315 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	CDK5RAP3	Q96JB5	506 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	TMX3	Q96JJ7	454 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	FBRSL1	Q9HCM7	1045 aa	Known RBP	12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	POLR3B	Q9NW08	1133 aa	Predicted RBP	12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	DSE	Q9UL01	958 aa		12.06	□□□□□ -0.48
PTPN7-204	ENST00000462815	DPYSL4	O14531	572 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	FAM13A	O94988	1023 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	EPN2	O95208	641 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	PXN	P49023	591 aa	Predicted RBP	12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	TAF6	P49848	677 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	KCNA1	Q09470	495 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	SMARCB1	Q12824	385 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	RUNX3	Q13761	415 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	DHX8	Q14562	1220 aa	Known RBP	12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	SF3A2	Q15428	464 aa	Known RBP	12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	CCDC142	Q17RM4	750 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	USP49	Q70CQ1	688 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	ZNF720	Q7Z2F6	126 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	LEO1	Q8WVC0	666 aa	Predicted RBP	12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	GAB3	Q8WWW8	586 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	FAM212A	Q96EL1	285 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	PYM1	Q9BRP8	204 aa	Known RBP	12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	GKN1	Q9NS71	199 aa		12.05	□□□□□ -0.48
PTPN7-204	ENST00000462815	DPP3	Q9NY33	737 aa		12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms