RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 HP1BP3Q5SSJ5 553 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-207ENST00000429896 LGSNQ5TDP6 509 aa13.61□□□□□ -0.23
PTCH1-207ENST00000429896 SV2AQ7L0J3 742 aa13.61□□□□□ -0.23
PTCH1-207ENST00000429896 PXYLP1Q8TE99 480 aa13.61□□□□□ -0.23
PTCH1-207ENST00000429896 HDAC11Q96DB2 347 aa13.61□□□□□ -0.23
PTCH1-207ENST00000429896 CDT1Q9H211 546 aa13.61□□□□□ -0.23
PTCH1-207ENST00000429896 MRPL17Q9NRX2 175 aaKnown RBP13.61□□□□□ -0.23
PTCH1-207ENST00000429896 OLA1Q9NTK5 396 aaKnown RBP13.61□□□□□ -0.23
PTCH1-207ENST00000429896 FARP1Q9Y4F1 1045 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-207ENST00000429896 KIF3CO14782 793 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 PALMO75781 387 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 PDGFRAP16234 1089 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 CLNS1AP54105 237 aaKnown RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 ALKBH8Q96BT7 664 aaKnown RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 SYT15Q9BQS2 421 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 MYH2Q9UKX2 1941 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 MORC4Q8TE76 937 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 MMTAG2Q9BU76 263 aaKnown RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 KLK7P49862 253 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 EPAS1Q99814 870 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 IGFLR1Q9H665 355 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 FAM105AQ9NUU6 356 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 KPNA7A9QM74 516 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 B4GALT5O43286 388 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 SRGAP2O75044 1071 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 FBXO32Q969P5 355 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 ERGIC2Q96RQ1 377 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 TRPV6Q9H1D0 765 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 HES2Q9Y543 173 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 CNTNAP2Q9UHC6 1331 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 ZRANB2O95218 330 aaKnown RBP eCLIP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 SNAI1O95863 264 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 OAS2P29728 719 aaKnown RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 HARS2P49590 506 aaKnown RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 FBXO46Q6PJ61 603 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 RAPH1Q70E73 1250 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 RFFLQ8WZ73 363 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 TRIB2Q92519 343 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 TMEM176AQ96HP8 235 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 TMEM117Q9H0C3 514 aa13.6□□□□□ -0.23
PTCH1-207ENST00000429896 ZMYND8Q9ULU4 1186 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-207ENST00000429896 ZMYM2Q9UBW7 1377 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 NT5DC1Q5TFE4 455 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 TSHZ1Q6ZSZ6 1077 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 MS4A4AQ96JQ5 239 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SAGE1Q9NXZ1 904 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 ANAPC5Q9UJX4 755 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 PADI3Q9ULW8 664 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 MORC2Q9Y6X9 1032 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 LRRIQ3A6PVS8 624 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 LGR5O75473 907 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 HEXIM1O94992 359 aaKnown RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 ECEL1O95672 775 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 STX2P32856 288 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 GRM5P41594 1212 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 TNS4Q8IZW8 715 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 CYFIP2Q96F07 1278 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 TSPAN18Q96SJ8 248 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SP110Q9HB58 689 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 IPPQ9Y573 584 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 VIRMAQ69YN4 1812 aaKnown RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 PPM1AP35813 382 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SARSP49591 514 aaKnown RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 GRIK3Q13003 919 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 ACCSLQ4AC99 568 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SPOPLQ6IQ16 392 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SH3RF1Q7Z6J0 888 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SLC7A14Q8TBB6 771 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 TRPM5Q9NZQ8 1165 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 GOLGA8CPA6NN73 597 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 HSPA1AP0DMV8 641 aaKnown RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 HSPA1BP0DMV9 641 aaKnown RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 KCNA4P22459 653 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 PHBP35232 272 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 GJA9P57773 515 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 RHOT1Q8IXI2 618 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 TTC13Q8NBP0 860 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 DNAJC19Q96DA6 116 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 RNPC3Q96LT9 517 aaKnown RBP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SPON2Q9BUD6 331 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 LMCD1Q9NZU5 365 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 BCAT1P54687 386 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 DEUP1Q05D60 604 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SLC24A5Q71RS6 500 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 TMEM86AQ8N2M4 240 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 CCHCR1Q8TD31 782 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 CISHQ9NSE2 258 aa13.59□□□□□ -0.23
PTCH1-207ENST00000429896 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTCH1-207ENST00000429896 SF3B1O75533 1304 aaKnown RBP eCLIP13.58□□□□□ -0.234e-7■■■■■ 133.7
PTCH1-207ENST00000429896 FRMD3A2A2Y4 597 aa13.58□□□□□ -0.23
PTCH1-207ENST00000429896 TISP43B9A030 160 aa13.58□□□□□ -0.23
PTCH1-207ENST00000429896 AGPAT5Q9NUQ2 364 aa13.58□□□□□ -0.23
PTCH1-207ENST00000429896 GTF2IRD1Q9UHL9 959 aa13.58□□□□□ -0.23
PTCH1-207ENST00000429896 BAIAP2L1Q9UHR4 511 aa13.58□□□□□ -0.23
PTCH1-207ENST00000429896 POC1B-GALNT4F8VUJ3 575 aa13.58□□□□□ -0.24
PTCH1-207ENST00000429896 XYLBO75191 536 aa13.58□□□□□ -0.24
PTCH1-207ENST00000429896 ARIH2O95376 493 aa13.58□□□□□ -0.24
PTCH1-207ENST00000429896 NCAM1P13591 858 aa13.58□□□□□ -0.24
PTCH1-207ENST00000429896 ACO1P21399 889 aaKnown RBP13.58□□□□□ -0.24
PTCH1-207ENST00000429896 CTNNA1P35221 906 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms