RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 AARSP49588 968 aaKnown RBP eCLIP18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 NAP1L1P55209 391 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 CLEC16AQ2KHT3 1053 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 TIGD5Q53EQ6 642 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 WSCD1Q658N2 575 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 ACOT1Q86TX2 421 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 PASD1Q8IV76 773 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 MSANTD4Q8NCY6 345 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 SPATA18Q8TC71 538 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 WHAMMQ8TF30 809 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 TOP1MTQ969P6 601 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 MTIF3Q9H2K0 278 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 DNAJB4Q9UDY4 337 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 INTUQ9ULD6 942 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 GUCA1BQ9UMX6 200 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 TSC2P49815 1807 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 DGKIO75912 1065 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 PDGFRBP09619 1106 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 SYN1P17600 705 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 PCSK1P29120 753 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 BRCC3P46736 316 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 DEFB103AP81534 67 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 NAA35Q5VZE5 725 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 TMEM35BQ8NCS4 154 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 KBTBD7Q8WVZ9 684 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 TRIM11Q96F44 468 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 SUSD3Q96L08 255 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 DDX43Q9NXZ2 648 aaKnown RBP18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 HESX1Q9UBX0 185 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 PCDHB8Q9UN66 801 aa18.2■□□□□ 0.5
CCDC28B-202ENST00000421922 I3L4J1 428 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 M0QYV0 167 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 FTLP02792 175 aaPredicted RBP18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 ABCB4P21439 1286 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 SSTR3P32745 418 aaPredicted RBP18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 ELAVL2Q12926 359 aaKnown RBP18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 ACAD10Q6JQN1 1059 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF662Q6ZS27 426 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF365Q70YC5 407 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 LIMS2Q7Z4I7 341 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 PALB2Q86YC2 1186 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 CRIPAKQ8N1N5 446 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 THEM5Q8N1Q8 247 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 SECISBP2LQ93073 1101 aaKnown RBP18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 VWCEQ96DN2 955 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 NOX5Q96PH1 765 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 PCDHB18PQ96TA0 734 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 YME1L1Q96TA2 773 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 ADAM28Q9UKQ2 775 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 ZMYND8Q9ULU4 1186 aaPredicted RBP18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 PCDHGC3Q9UN70 934 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 STXBP5LQ9Y2K9 1186 aa18.19■□□□□ 0.5
CCDC28B-202ENST00000421922 SZT2Q5T011 3432 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 CARNS1A5YM72 827 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 ANKRD62A6NC57 917 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 M0QZQ0 153 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 NRP1O14786 923 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 PJA2O43164 708 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 B4GALT3O60512 393 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 TUBB4AP04350 444 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 TMEM253P0C7T8 217 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 TYMPP19971 482 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 ALDH7A1P49419 539 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 GALCP54803 685 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 BTG3Q14201 252 aaPredicted RBP18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 IFI16Q16666 785 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 OVOS1Q6IE37 1185 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 TFAP2BQ92481 460 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 CYFIP2Q96F07 1278 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 ALS2CR12Q96Q35 445 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 ZBED2Q9BTP6 218 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 PACSIN1Q9BY11 444 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF518BQ9C0D4 1074 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 FAM49BQ9NUQ9 324 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 TAS2R14Q9NYV8 317 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 NENFQ9UMX5 172 aa18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 TIMM13Q9Y5L4 95 aaPredicted RBP18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 SF3B1O75533 1304 aaKnown RBP eCLIP18.18■□□□□ 0.5
CCDC28B-202ENST00000421922 FAM170AA1A519 330 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 MACROD2A1Z1Q3 448 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 CYP1A1P04798 512 aaPredicted RBP18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 CYP11A1P05108 521 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 NOP2P46087 812 aaKnown RBP18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 SLC11A1P49279 550 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 NOMO3P69849 1222 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 CNGA2Q16280 664 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 GOLGA7BQ2TAP0 167 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 LIN9Q5TKA1 542 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 OSTM1Q86WC4 334 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 CMTR2Q8IYT2 770 aaKnown RBP18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 B3GALNT2Q8NCR0 500 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 OLIG1Q8TAK6 271 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 CPA5Q8WXQ8 436 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF653Q96CK0 615 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 SYT15Q9BQS2 421 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 LACRTQ9GZZ8 138 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 ISCUQ9H1K1 167 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 SYNCQ9H7C4 482 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 TRIM10Q9UDY6 481 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 CDH9Q9ULB4 789 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms