RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 STX17P56962 302 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 NLRP12P59046 1061 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 MCCD1P59942 119 aaPredicted RBP11.68□□□□□ -0.54
CHMP3-205ENST00000409810 PPP3CAQ08209 521 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 SOWAHAQ2M3V2 549 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 SLC39A12Q504Y0 691 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 INTS6LQ5JSJ4 861 aaKnown RBP11.68□□□□□ -0.54
CHMP3-205ENST00000409810 IQCEQ6IPM2 695 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 OTOP3Q7RTS5 596 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 TDRD5Q8NAT2 981 aaKnown RBP11.68□□□□□ -0.54
CHMP3-205ENST00000409810 SPPL2BQ8TCT7 592 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 ZNF707Q96C28 371 aaPredicted RBP11.68□□□□□ -0.54
CHMP3-205ENST00000409810 ACSF2Q96CM8 615 aaPredicted RBP11.68□□□□□ -0.54
CHMP3-205ENST00000409810 RPGRIP1Q96KN7 1286 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 NECAB3Q96P71 396 aaPredicted RBP11.68□□□□□ -0.54
CHMP3-205ENST00000409810 PGLYRP2Q96PD5 576 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 XYLT2Q9H1B5 865 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 SNX25Q9H3E2 840 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 NXF1Q9UBU9 619 aaKnown RBP11.68□□□□□ -0.54
CHMP3-205ENST00000409810 CDH9Q9ULB4 789 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 USTQ9Y2C2 406 aa11.68□□□□□ -0.54
CHMP3-205ENST00000409810 C19orf67A6NJJ6 358 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 LOC730098B7Z3J9 87 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 VNN1O95497 513 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 ASS1P00966 412 aaKnown RBP11.67□□□□□ -0.54
CHMP3-205ENST00000409810 CCDC192P0DO97 292 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 ALDH1A3P47895 512 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 TUFMP49411 452 aaKnown RBP11.67□□□□□ -0.54
CHMP3-205ENST00000409810 NOP14P78316 857 aaKnown RBP11.67□□□□□ -0.54
CHMP3-205ENST00000409810 TWF1Q12792 350 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 CETN1Q12798 172 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 MAPRE1Q15691 268 aaKnown RBP11.67□□□□□ -0.54
CHMP3-205ENST00000409810 TPD52L1Q16890 204 aaPredicted RBP11.67□□□□□ -0.54
CHMP3-205ENST00000409810 MGAT5BQ3V5L5 792 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 CT47A1Q5JQC4 288 aaPredicted RBP11.67□□□□□ -0.54
CHMP3-205ENST00000409810 C1orf220Q5T0J3 134 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 CCDC183Q5T5S1 534 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 SCARA3Q6AZY7 606 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 C4orf50Q6ZRC1 276 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 LIMS2Q7Z4I7 341 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 OSTM1Q86WC4 334 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 PLCD3Q8N3E9 789 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 OR6B3Q8NGW1 331 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 TMEM209Q96SK2 561 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 DUSP9Q99956 384 aaKnown RBP11.67□□□□□ -0.54
CHMP3-205ENST00000409810 RTP3Q9BQQ7 232 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 DNAI2Q9GZS0 605 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 CDH22Q9UJ99 828 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 YIPF1Q9Y548 306 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 PCDHB5Q9Y5E4 795 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 NOTCH4Q99466 2003 aa11.67□□□□□ -0.54
CHMP3-205ENST00000409810 TNFRSF10AO00220 468 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 DLL1O00548 723 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 SEC24AO95486 1093 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 ERCC5P28715 1186 aaPredicted RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 GNL1P36915 607 aaPredicted RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 EPHB3P54753 998 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 MARSP56192 900 aaKnown RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 DUSP4Q13115 394 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 VEPH1Q14D04 833 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 PABPC1LQ4VXU2 614 aaKnown RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 WDR44Q5JSH3 913 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 SASS6Q6UVJ0 657 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 SCARA5Q6ZMJ2 495 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 RBM43Q6ZSC3 357 aaKnown RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 GRASPQ7Z6J2 395 aaPredicted RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 ITIH5Q86UX2 942 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 SPATA2LQ8IUW3 424 aaPredicted RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 FAM114A1Q8IWE2 563 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 ATAD1Q8NBU5 361 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 LEMD2Q8NC56 503 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 FBXL13Q8NEE6 735 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 TAS1R2Q8TE23 839 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 KBTBD7Q8WVZ9 684 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 FUBP3Q96I24 572 aaKnown RBP eCLIP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 FAXDC2Q96IV6 333 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 ZNF512Q96ME7 567 aaPredicted RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 SEPT5Q99719 369 aaPredicted RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 SYT15Q9BQS2 421 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 MRPL45Q9BRJ2 306 aaKnown RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 SRRTQ9BXP5 876 aaKnown RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 NIF3L1Q9GZT8 377 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 ABCB6Q9NP58 842 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 ABI2Q9NYB9 513 aaPredicted RBP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.66□□□□□ -0.54
CHMP3-205ENST00000409810 ASB3Q9Y575 518 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 CUL9Q8IWT3 2517 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 MUC3AQ02505 3323 aa11.66□□□□□ -0.54
CHMP3-205ENST00000409810 DENND4CQ5VZ89 1909 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 A8MXQ7 604 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 ZNF197O14709 1029 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 P4HA2O15460 535 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 RHOP08100 348 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 PTPN2P17706 415 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 SP100P23497 879 aaPredicted RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 FSHRP23945 695 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 ACAT1P24752 427 aaKnown RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 GBP2P32456 591 aaPredicted RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 DPCR1Q3MIW9 517 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 CYP4A22Q5TCH4 519 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms