RNA–Protein interactions for RNA: ENST00000396547.5

TRIM39-203, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene TRIM39, Length 3,187 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-203ENST00000396547 SMYD3Q9H7B4 428 aa10.36□□□□□ -0.75
TRIM39-203ENST00000396547 SYNCQ9H7C4 482 aa10.36□□□□□ -0.75
TRIM39-203ENST00000396547 ZNF395Q9H8N7 513 aaPredicted RBP10.36□□□□□ -0.75
TRIM39-203ENST00000396547 PGAP2Q9UHJ9 254 aa10.36□□□□□ -0.75
TRIM39-203ENST00000396547 SMG5Q9UPR3 1016 aaKnown RBP10.36□□□□□ -0.75
TRIM39-203ENST00000396547 MAGEA13PA6NCF6 341 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 CCDC160A6NGH7 325 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 C2CD2LO14523 706 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 ATP2A1O14983 1001 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 STK10O94804 968 aaKnown RBP10.35□□□□□ -0.75
TRIM39-203ENST00000396547 NOVP48745 357 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 IRX4P78413 519 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 MCL1Q07820 350 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 CDC42EP5Q6NZY7 148 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 RHPN2Q8IUC4 686 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 MCOLN2Q8IZK6 566 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 ZCCHC9Q8N567 271 aaKnown RBP10.35□□□□□ -0.75
TRIM39-203ENST00000396547 BBOF1Q8ND07 529 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 TUBGCP5Q96RT8 1024 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 SHCBP1LQ9BZQ2 653 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 RNF181Q9P0P0 153 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 ARHGAP42A6NI28 874 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 KRT1P04264 644 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 ARL4CP56559 192 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 SNRNP35Q16560 246 aaKnown RBP10.35□□□□□ -0.75
TRIM39-203ENST00000396547 CCNG2Q16589 344 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 CLEC16AQ2KHT3 1053 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 SGSM1Q2NKQ1 1148 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 MTHFD1LQ6UB35 978 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 SH3TC2Q8TF17 1288 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 RILPQ96NA2 401 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 PRDM16Q9HAZ2 1276 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 PSMC3IPQ9P2W1 217 aaPredicted RBP10.35□□□□□ -0.75
TRIM39-203ENST00000396547 MAST2Q6P0Q8 1798 aa10.35□□□□□ -0.75
TRIM39-203ENST00000396547 DDTLA6NHG4 134 aaPredicted RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 FCHO1O14526 889 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 TLR3O15455 904 aaKnown RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 TCEA3O75764 348 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 ZWINTO95229 277 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MT-ND3P03897 115 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 RPS12P25398 132 aaKnown RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 NRLP54845 237 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 ALCAMQ13740 583 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 KRT39Q6A163 491 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MFSD7Q6UXD7 560 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 SYDE1Q6ZW31 735 aaPredicted RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 CENPUQ71F23 418 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MIER3Q7Z3K6 550 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 SHC3Q92529 594 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 ZNF184Q99676 751 aaPredicted RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 NMUR2Q9GZQ4 415 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 TUFT1Q9NNX1 390 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 KRT82Q9NSB4 513 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 SEL1LQ9UBV2 794 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 ACTL7BQ9Y614 415 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MEI4A8MW99 385 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MAGEB2O15479 319 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 LPXNO60711 386 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 RFX1P22670 979 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 CCNFP41002 786 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 ALDH18A1P54886 795 aaKnown RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 WDR72Q3MJ13 1102 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 CTAGE3PQ8IX95 158 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 RHOT1Q8IXI2 618 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 CERS5Q8N5B7 392 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 EFCAB3Q8N7B9 438 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 FNBP1Q96RU3 617 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MECRQ9BV79 373 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 RAB20Q9NX57 234 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 ZNRF3Q9ULT6 936 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 IKBKGQ9Y6K9 419 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 IGLV3-22A0A075B6J6 115 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 IPO5O00410 1097 aaKnown RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 DNALI1O14645 258 aaPredicted RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 PRPF4O43172 522 aaKnown RBP eCLIP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 PSMD10O75832 226 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MTA2O94776 668 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 LYNP07948 512 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 RTP1P59025 263 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 SP4Q02446 784 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 NFX1Q12986 1120 aaKnown RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 RASA2Q15283 850 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 SMAD1Q15797 465 aaKnown RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 CTC1Q2NKJ3 1217 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 C1orf146Q5VVC0 180 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 PLA2G4FQ68DD2 849 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 MOXD1Q6UVY6 613 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 SHKBP1Q8TBC3 707 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 HELQQ8TDG4 1101 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 CRYGNQ8WXF5 182 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 USP6NLQ92738 828 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 NMD3Q96D46 503 aaKnown RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 BICD1Q96G01 975 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 PAFAH2Q99487 392 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 SLC13A1Q9BZW2 595 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 TMX4Q9H1E5 349 aaPredicted RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 ZNF219Q9P2Y4 722 aaPredicted RBP10.34□□□□□ -0.75
TRIM39-203ENST00000396547 TCEAL9Q9UHQ7 104 aa10.34□□□□□ -0.75
TRIM39-203ENST00000396547 DDX60LQ5H9U9 1706 aaKnown RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms