RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 DALRD3Q5D0E6 543 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 XKR3Q5GH77 459 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 FBXO16Q8IX29 292 aaPredicted RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 RTKN2Q8IZC4 609 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 EFCAB3Q8N7B9 438 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 FBXO36Q8NEA4 188 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP1-201ENST00000339950 RNF34Q969K3 372 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 SPATA33Q96N06 139 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 KLK14Q9P0G3 267 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 FNDC3AQ9Y2H6 1198 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 ITGB4P16144 1822 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 PROSCO94903 275 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 SFNP31947 248 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 PTGIRP43119 386 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 MPP2Q14168 576 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 DUOXA2Q1HG44 320 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 BMT2Q1RMZ1 405 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 C6orf163Q5TEZ5 329 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 DCAF15Q66K64 600 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 ARMC2Q8NEN0 867 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 PSPC1Q8WXF1 523 aaKnown RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 ZNF516Q92618 1163 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 TEX13BQ9BXU2 312 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 ZDHHC18Q9NUE0 388 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.55□□□□□ -0.4
USP1-201ENST00000339950 IL1RAPL1Q9NZN1 696 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 PIM2Q9P1W9 311 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 SNX9Q9Y5X1 595 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 CREB3O43889 395 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 ESRRAP11474 423 aaPredicted RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 EPHB2P29323 1055 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 POLR2BP30876 1174 aaKnown RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 ELF3P78545 371 aaPredicted RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 LRRC6Q86X45 466 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 RASGEF1CQ8N431 466 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 RPS6KC1Q96S38 1066 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 TMEM59LQ9UK28 342 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 I3L4J1 428 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 LPXNO60711 386 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 FAM155BO75949 473 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 CPP00450 1065 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 CETPP11597 493 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 GZMAP12544 262 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 SOX11P35716 441 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 GPC3P51654 580 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 ALDH18A1P54886 795 aaKnown RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 SPDYE2Q495Y8 402 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 FIZ1Q96SL8 496 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 AS3MTQ9HBK9 375 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 APOBEC3GQ9HC16 384 aaKnown RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 NOP53Q9NZM5 478 aaKnown RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 NOCTQ9UK39 431 aaKnown RBP12.55□□□□□ -0.4
USP1-201ENST00000339950 STRCP1A6NGW2 1772 aa12.55□□□□□ -0.4
USP1-201ENST00000339950 GYG2O15488 501 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 SNX3O60493 162 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 ATP6V1G2O95670 118 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 NCF2P19878 526 aaPredicted RBP12.54□□□□□ -0.4
USP1-201ENST00000339950 RASSF2P50749 326 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 SLC15A2Q16348 729 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 TRMT10CQ7L0Y3 403 aaKnown RBP12.54□□□□□ -0.4
USP1-201ENST00000339950 SLFN11Q7Z7L1 901 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 JOSD2Q8TAC2 188 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 P3H4Q92791 437 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 PCMTD2Q9NV79 361 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 HES2Q9Y543 173 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 SCINQ9Y6U3 715 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 MAPK13O15264 365 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 EXTL3O43909 919 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 NQO1P15559 274 aaKnown RBP12.54□□□□□ -0.4
USP1-201ENST00000339950 DESP17661 470 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 PHBP35232 272 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 FNTAP49354 379 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 ARL4CP56559 192 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 CFAP157Q5JU67 520 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 NXNQ6DKJ4 435 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 FAM161BQ96MY7 647 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 GBP5Q96PP8 586 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 TSC22D3Q99576 134 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 APOL2Q9BQE5 337 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 TRIM4Q9C037 500 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 DMAC2Q9NW81 257 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 IP6K2Q9UHH9 426 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 PTPRJQ12913 1337 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 ENTPD5O75356 428 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 COPS2P61201 443 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 MAMLD1Q13495 774 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 DENND1BQ6P3S1 775 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 CROCCP2Q86T23 111 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 C4orf19Q8IY42 314 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 C12orf29Q8N999 325 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 YY1AP1Q9H869 796 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 ADAMTSL3P82987 1691 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 CFLARO15519 480 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 NPTXRO95502 500 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 ARL1P40616 181 aaPredicted RBP12.54□□□□□ -0.4
USP1-201ENST00000339950 PEX5P50542 639 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 GTF2BQ00403 316 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 NME3Q13232 169 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 KCTD2Q14681 263 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms