RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 POLBP06746 335 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 TADA1Q96BN2 335 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 ERP44Q9BS26 406 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 ERVK-24P63145 666 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 HIC1Q14526 733 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 ZC3H7BQ9UGR2 993 aaKnown RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 HPSEQ9Y251 543 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 ARHGEF9O43307 516 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 CLASP2O75122 1294 aaKnown RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 APRTP07741 180 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 FAM200BP0CF97 657 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 CD44P16070 742 aaKnown RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 VCPP55072 806 aaKnown RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 RBM43Q6ZSC3 357 aaKnown RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 RFX8Q6ZV50 586 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 C4orf33Q8N1A6 199 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 ATXN7L3BQ96GX2 97 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 OSBPL1AQ9BXW6 950 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 OSBPL8Q9BZF1 889 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 KLHL2O95198 593 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 GTF2H1P32780 548 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 SLC11A2P49281 568 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 MKRN4PQ13434 485 aaPredicted RBP19.97■□□□□ 0.79
UPF1-201ENST00000262803 TMED1Q13445 227 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 BFSP2Q13515 415 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 BOLA3Q53S33 107 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 SYCP2LQ5T4T6 812 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 ZNF467Q7Z7K2 595 aaPredicted RBP19.97■□□□□ 0.79
UPF1-201ENST00000262803 MCEEQ96PE7 176 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 RANBP17Q9H2T7 1088 aaKnown RBP19.97■□□□□ 0.79
UPF1-201ENST00000262803 MROH8Q9H579 483 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 PLEKP08567 350 aaPredicted RBP19.97■□□□□ 0.79
UPF1-201ENST00000262803 SLC26A2P50443 739 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 PGBD3Q8N328 593 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 KCNK16Q96T55 309 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 ZNF556Q9HAH1 456 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 MAN1A2O60476 641 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 ETFBP38117 255 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 PLA2G4FQ68DD2 849 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 AGR3Q8TD06 166 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 ABHD8Q96I13 439 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 SEPT5Q99719 369 aaPredicted RBP19.97■□□□□ 0.79
UPF1-201ENST00000262803 PKP3Q9Y446 797 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 GPR75-ASB3A0A0A6YYF3 556 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 PGM1P36871 562 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 KCNJ1P48048 391 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 CATSPER3Q86XQ3 398 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 RNF135Q8IUD6 432 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 RAB6BQ9NRW1 208 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 PKD2L2Q9NZM6 624 aa19.97■□□□□ 0.79
UPF1-201ENST00000262803 EIF4E1BA6NMX2 242 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 TRIM66O15016 1216 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 ATMINO43313 823 aaPredicted RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 CHRNA5P30532 468 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 GID8Q9NWU2 228 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 H2AFYO75367 372 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 F9P00740 461 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 TP53BP2Q13625 1128 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 KYNUQ16719 465 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 FBXW10Q5XX13 1052 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 PTRHD1Q6GMV3 140 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 ELMO2Q96JJ3 720 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 MRPL1Q9BYD6 325 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 UTP6Q9NYH9 597 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.96■□□□□ 0.793e-6■■■■□ 24.3
UPF1-201ENST00000262803 IPPQ9Y573 584 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 FAM47DPA6NHR8 397 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 PPP4CP60510 307 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 HPCAP84074 193 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 DYNC1I2Q13409 638 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 LRRC23Q53EV4 343 aaPredicted RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 EFCAB12Q6NXP0 572 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 ARL8AQ96BM9 186 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 STAMBPL1Q96FJ0 436 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 SEC16BQ96JE7 1060 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 EMILIN2Q9BXX0 1053 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 SPACA6W5XKT8 324 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 PPRC1Q5VV67 1664 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 POLRMTO00411 1230 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 ZC3H11AO75152 810 aaKnown RBP eCLIP19.96■□□□□ 0.79
UPF1-201ENST00000262803 HLA-DRAP01903 254 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 ATXN8OSP0DMR3 200 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 MYL2P10916 166 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 ZNF200P98182 395 aaPredicted RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 USP10Q14694 798 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 TTC30BQ8N4P2 665 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 LINC00116Q8NCU8 138 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 CDK5RAP1Q96SZ6 601 aaKnown RBP19.96■□□□□ 0.79
UPF1-201ENST00000262803 RBBP8Q99708 897 aa19.96■□□□□ 0.79
UPF1-201ENST00000262803 SEC24CP53992 1094 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 GEMP55040 296 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 GRAMD4Q6IC98 578 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 BBS7Q8IWZ6 715 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 PCSK9Q8NBP7 692 aaKnown RBP19.95■□□□□ 0.78
UPF1-201ENST00000262803 CEP70Q8NHQ1 597 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 PHF21AQ96BD5 680 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 FUCA2Q9BTY2 467 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 GNL1P36915 607 aaPredicted RBP19.95■□□□□ 0.78
UPF1-201ENST00000262803 AMPD2Q01433 879 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 MGAT5BQ3V5L5 792 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms