RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 PSTPIP1O43586 416 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 KDM1AO60341 852 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 NAMPTP43490 491 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 PTK6Q13882 451 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 HIC1Q14526 733 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 SPATA21Q7Z572 469 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 ADGRF2Q8IZF7 708 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 ZDHHC15Q96MV8 337 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 WARS2Q9UGM6 360 aaKnown RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 CDV3Q9UKY7 258 aaKnown RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 CHMP2BQ9UQN3 213 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 RNF103-CHMP3A0A140T963 221 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 MUTP22033 750 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 MMP14P50281 582 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 RARS2Q5T160 578 aaKnown RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 C16orf87Q6PH81 154 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 HS6ST3Q8IZP7 471 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 RBM15Q96T37 977 aaKnown RBP eCLIP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 MROH8Q9H579 483 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 C17orf75Q9HAS0 396 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 AURKCQ9UQB9 309 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 SLC11A2P49281 568 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 STK4Q13043 487 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 COBLL1Q53SF7 1204 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 UGT3A1Q6NUS8 523 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 LINC00523Q86TU6 105 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 CARNMT1Q8N4J0 409 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 C1orf131Q8NDD1 294 aaKnown RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 SLC16A10Q8TF71 515 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 SYN2Q92777 582 aaPredicted RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 WDR24Q96S15 920 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 EPC1Q9H2F5 836 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 WDCPQ9H6R7 721 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 VWDEQ8N2E2 1590 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 RHOBTB1O94844 696 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 CTDNEP1O95476 244 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 KRT16P08779 473 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 MBL2P11226 248 aaPredicted RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 FDFT1P37268 417 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 PPP4CP60510 307 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 GRB10Q13322 594 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 TNS2Q63HR2 1409 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 CD302Q8IX05 232 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 PPIL6Q8IXY8 311 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 CATSPER1Q8NEC5 780 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 SPATA18Q8TC71 538 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 SLITRK1Q96PX8 696 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 RUBCNLQ9H714 662 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 DBR1Q9UK59 544 aaKnown RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 HPS5Q9UPZ3 1129 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 CFAP73A6NFT4 308 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 PPP1R3GB7ZBB8 358 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 F5H5T6 163 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 SOAT1P35610 550 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 HDAC4P56524 1084 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 STX3Q13277 289 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 ZNF177Q13360 481 aaPredicted RBP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 DENND5BQ6ZUT9 1274 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 ANO5Q75V66 913 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 B4GALNT2Q8NHY0 566 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 PPCSQ9HAB8 311 aa9.09□□□□□ -0.95
PTCD3-201ENST00000254630 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.09□□□□□ -0.95
PTCD3-201ENST00000254630 PGK2P07205 417 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 RGS4P49798 205 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 ITGA8P53708 1063 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 ORC1Q13415 861 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 HERC6Q8IVU3 1022 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 PARP9Q8IXQ6 854 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 CNPY4Q8N129 248 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 FAM71DQ8N9W8 422 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 GOLPH3Q9H4A6 298 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 DSEQ9UL01 958 aa9.09□□□□□ -0.96
PTCD3-201ENST00000254630 CEMIPQ8WUJ3 1361 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 VGLL3A8MV65 326 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 HOXA2O43364 376 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 ZNF286BP0CG31 522 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 VCAM1P19320 739 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 BACE1P56817 501 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 BFSP2Q13515 415 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 GLRA4Q5JXX5 417 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 ELOA2Q8IYF1 753 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-201ENST00000254630 SAMD3Q8N6K7 520 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 ACSF2Q96CM8 615 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-201ENST00000254630 TMA16Q96EY4 203 aaKnown RBP9.08□□□□□ -0.96
PTCD3-201ENST00000254630 AGPAT3Q9NRZ7 376 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 GIMAP4Q9NUV9 329 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 CYB561D2O14569 222 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 SGPL1O95470 568 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 HLA-DPA1P20036 260 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 SPRP35270 261 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-201ENST00000254630 AVPR1AP37288 418 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 NUP93Q8N1F7 819 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 SHCBP1Q8NEM2 672 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 TNIP2Q8NFZ5 429 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 CGRRF1Q99675 332 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 RTFDC1Q9BY42 306 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-201ENST00000254630 KCNF1Q9H3M0 494 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 M0QYT0 321 aa9.08□□□□□ -0.96
PTCD3-201ENST00000254630 SPAG6O75602 509 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms