RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	RPS25B	P0C0T4	108 aa	Known RBP	5.03	□□□□□ -1.6
RPT3	YDR394W	NHP6A	P11632	93 aa	Known RBP	5.03	□□□□□ -1.6
RPT3	YDR394W	ELO2	P25358	347 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	ALK2	P32789	676 aa	Predicted RBP	5.03	□□□□□ -1.6
RPT3	YDR394W	YBL059W	P34224	193 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	YBR220C	P38318	560 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	SUR2	P38992	349 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	YJL118W	P47022	219 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	RPL9B	P51401	191 aa	Known RBP	5.03	□□□□□ -1.6
RPT3	YDR394W	BOR1	P53838	576 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	RPL21A	Q02753	160 aa	Known RBP	5.03	□□□□□ -1.6
RPT3	YDR394W	AVO2	Q04749	426 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	YDL218W	Q07629	317 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	GAT3	Q07928	141 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	YPR063C	Q12160	140 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	ERV2	Q12284	196 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	COX17	Q12287	69 aa		5.03	□□□□□ -1.6
RPT3	YDR394W	RPL21B	Q12672	160 aa	Known RBP	5.03	□□□□□ -1.6
RPT3	YDR394W	RPS25A	Q3E792	108 aa	Predicted RBP	5.03	□□□□□ -1.6
RPT3	YDR394W	RPS22A	P0C0W1	130 aa	Known RBP	5.02	□□□□□ -1.61
RPT3	YDR394W	PAU19	P0CE85	124 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	PAU21	P0CE86	164 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	PAU22	P0CE87	164 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	URA5	P13298	226 aa	Known RBP	5.02	□□□□□ -1.61
RPT3	YDR394W	RPI1	P23250	407 aa	Known RBP	5.02	□□□□□ -1.61
RPT3	YDR394W	PAU3	P25610	124 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	QDR3	P38227	689 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	CUE1	P38428	203 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	LOC1	P43586	204 aa	Predicted RBP	5.02	□□□□□ -1.61
RPT3	YDR394W	LSM8	P47093	109 aa	Known RBP	5.02	□□□□□ -1.61
RPT3	YDR394W	CGR1	P53188	120 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	SMM1	P53720	384 aa	Known RBP	5.02	□□□□□ -1.61
RPT3	YDR394W	CRZ1	P53968	678 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	FRQ1	Q06389	190 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	RAD28	Q12021	506 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	YOP1	Q12402	180 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	RAX2	Q12465	1220 aa		5.02	□□□□□ -1.61
RPT3	YDR394W	SEN1	Q00416	2231 aa	Known RBP	5.01	□□□□□ -1.61
RPT3	YDR394W	PET494	P07390	489 aa	Predicted RBP	5.01	□□□□□ -1.61
RPT3	YDR394W	FPR2	P32472	135 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	SOR1	P35497	357 aa	Known RBP	5.01	□□□□□ -1.61
RPT3	YDR394W	ATP3	P38077	311 aa	Known RBP	5.01	□□□□□ -1.61
RPT3	YDR394W	YBR013C	P38215	129 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	NSA2	P40078	261 aa	Known RBP	5.01	□□□□□ -1.61
RPT3	YDR394W	YFL051C	P43552	160 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	PAU5	P43575	122 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	SUR7	P54003	302 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	ATC1	Q04005	294 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	YDR114C	Q04597	100 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	SOR2	Q07786	357 aa		5.01	□□□□□ -1.61
RPT3	YDR394W	POC4	Q12245	148 aa	Predicted RBP	5.01	□□□□□ -1.61
RPT3	YDR394W	CDC39	P25655	2108 aa	Known RBP	5	□□□□□ -1.61
RPT3	YDR394W	AVT5	P38176	459 aa		5	□□□□□ -1.61
RPT3	YDR394W	CDS1	P38221	457 aa		5	□□□□□ -1.61
RPT3	YDR394W	CYB5	P40312	120 aa		5	□□□□□ -1.61
RPT3	YDR394W	DFG10	P40526	253 aa		5	□□□□□ -1.61
RPT3	YDR394W	PIR5	P46999	287 aa		5	□□□□□ -1.61
RPT3	YDR394W	MIC27	P50945	234 aa		5	□□□□□ -1.61
RPT3	YDR394W	YGL114W	P53134	725 aa		5	□□□□□ -1.61
RPT3	YDR394W	SSU72	P53538	206 aa	Predicted RBP	5	□□□□□ -1.61
RPT3	YDR394W	FYV6	P53913	173 aa		5	□□□□□ -1.61
RPT3	YDR394W	YNL046W	P53956	172 aa		5	□□□□□ -1.61
RPT3	YDR394W	APS2	Q00381	147 aa		5	□□□□□ -1.61
RPT3	YDR394W	YMR007W	Q03675	126 aa		5	□□□□□ -1.61
RPT3	YDR394W	ARR3	Q06598	404 aa		5	□□□□□ -1.61
RPT3	YDR394W	USV1	Q12132	391 aa		5	□□□□□ -1.61
RPT3	YDR394W	ATP10	P18496	279 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	TOM40	P23644	387 aa	Known RBP	4.99	□□□□□ -1.61
RPT3	YDR394W	COQ3	P27680	312 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	TCA17	P32613	152 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	YNK1	P36010	153 aa	Known RBP	4.99	□□□□□ -1.61
RPT3	YDR394W	DER1	P38307	211 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	SAS2	P40963	338 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	GPI2	P46961	280 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	ATG27	P46989	271 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	YJR015W	P47090	510 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	BNA2	P47125	453 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	DYN2	Q02647	92 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	YPL108W	Q02872	168 aa	Predicted RBP	4.99	□□□□□ -1.61
RPT3	YDR394W	PML1	Q07930	204 aa	Predicted RBP	4.99	□□□□□ -1.61
RPT3	YDR394W	LSO2	Q3E772	92 aa	Known RBP	4.99	□□□□□ -1.61
RPT3	YDR394W	YOS1	Q3E834	85 aa		4.99	□□□□□ -1.61
RPT3	YDR394W	FMP49	A0A023PZB3	126 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	RPL39	P04650	51 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	HMX1	P32339	317 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	SSS1	P35179	80 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	NOP16	P40007	231 aa	Known RBP	4.98	□□□□□ -1.61
RPT3	YDR394W	TAX4	P47030	604 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	YGL260W	P53056	76 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	LST7	P53237	242 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	CRH1	P53301	507 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	DAD3	P69850	94 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	SED1	Q01589	338 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	ARL3	Q02804	198 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	SHH3	Q04487	196 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	POM34	Q12445	299 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	YMR105W-A	Q8TGS8	64 aa		4.98	□□□□□ -1.61
RPT3	YDR394W	GCN1	P33892	2672 aa	Known RBP	4.97	□□□□□ -1.61
RPT3	YDR394W	NOP1	P15646	327 aa	Known RBP	4.97	□□□□□ -1.61
RPT3	YDR394W	RNA15	P25299	296 aa	Predicted RBP	4.97	□□□□□ -1.61

Retrieved 100 of 5,963 RNA–protein pairs in 64.7 ms