RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W SPS18P32572 300 aa0.81□□□□□ -2.28
CDC39YCR093W NUF2P33895 451 aa0.81□□□□□ -2.28
CDC39YCR093W YJR149WP47177 404 aa0.81□□□□□ -2.28
CDC39YCR093W EFM5P53200 248 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W PIN3Q06449 215 aa0.81□□□□□ -2.28
CDC39YCR093W RAS2P01120 322 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W SIR2P06700 562 aa0.81□□□□□ -2.28
CDC39YCR093W SEC4P07560 215 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W HSP30P25619 332 aa0.81□□□□□ -2.28
CDC39YCR093W MPA43P53583 542 aaPredicted RBP0.81□□□□□ -2.28
CDC39YCR093W YPR127WQ06494 345 aa0.81□□□□□ -2.28
CDC39YCR093W NSA2P40078 261 aaKnown RBP0.81□□□□□ -2.28
CDC39YCR093W ANT1Q06497 328 aa0.81□□□□□ -2.28
CDC39YCR093W MSA2P36157 363 aa0.8□□□□□ -2.28
CDC39YCR093W YBR062CP38239 180 aa0.8□□□□□ -2.28
CDC39YCR093W SMB1P40018 196 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W SNX4P47057 423 aa0.8□□□□□ -2.28
CDC39YCR093W MPD1Q12404 318 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W CDC7P06243 507 aa0.8□□□□□ -2.28
CDC39YCR093W NSP1P14907 823 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W TOM40P23644 387 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W YCR025CP25352 136 aa0.8□□□□□ -2.28
CDC39YCR093W RFC2P40348 353 aa0.8□□□□□ -2.28
CDC39YCR093W SHH4Q06236 168 aa0.8□□□□□ -2.28
CDC39YCR093W FSF1Q12029 327 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W YLR050CQ12155 161 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W YKL183C-AQ3E765 70 aa0.8□□□□□ -2.28
CDC39YCR093W MBF1O14467 151 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W ASF2P32448 525 aaPredicted RBP0.8□□□□□ -2.28
CDC39YCR093W NSG1P38837 291 aa0.8□□□□□ -2.28
CDC39YCR093W ARO8P53090 500 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W YGR050CP53231 118 aa0.8□□□□□ -2.28
CDC39YCR093W YML079WQ03629 201 aa0.8□□□□□ -2.28
CDC39YCR093W GAS3Q03655 524 aa0.8□□□□□ -2.28
CDC39YCR093W MIX17Q03667 156 aa0.8□□□□□ -2.28
CDC39YCR093W YNG1Q08465 219 aa0.8□□□□□ -2.28
CDC39YCR093W YOR214CQ12282 236 aa0.8□□□□□ -2.28
CDC39YCR093W PRE1P22141 198 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W TAF14P35189 244 aa0.8□□□□□ -2.28
CDC39YCR093W SRP102P36057 244 aaPredicted RBP0.8□□□□□ -2.28
CDC39YCR093W CDC14Q00684 551 aa0.8□□□□□ -2.28
CDC39YCR093W RAV2Q03956 351 aa0.8□□□□□ -2.28
CDC39YCR093W RPB3P16370 318 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W SCL1P21243 252 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W YFR054CP43622 192 aa0.8□□□□□ -2.28
CDC39YCR093W TDA4P47153 279 aa0.8□□□□□ -2.28
CDC39YCR093W MPC1P53157 130 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W RCE1Q03530 315 aa0.8□□□□□ -2.28
CDC39YCR093W RRP17Q04031 235 aaPredicted RBP0.8□□□□□ -2.28
CDC39YCR093W YMR315WQ04869 349 aaKnown RBP0.8□□□□□ -2.28
CDC39YCR093W TUS1Q06412 1307 aa0.8□□□□□ -2.28
CDC39YCR093W RAD6P06104 172 aa0.79□□□□□ -2.28
CDC39YCR093W COS2P0CX12 379 aa0.79□□□□□ -2.28
CDC39YCR093W COS3P0CX13 379 aa0.79□□□□□ -2.28
CDC39YCR093W RPO26P20435 155 aa0.79□□□□□ -2.28
CDC39YCR093W GAA1P39012 614 aa0.79□□□□□ -2.28
CDC39YCR093W COG5P53951 403 aa0.79□□□□□ -2.28
CDC39YCR093W YMR007WQ03675 126 aa0.79□□□□□ -2.28
CDC39YCR093W FLO9P39712 1322 aa0.79□□□□□ -2.28
CDC39YCR093W DPM1P14020 267 aaKnown RBP0.79□□□□□ -2.28
CDC39YCR093W YBL010CP32788 280 aa0.79□□□□□ -2.28
CDC39YCR093W YRA2P36036 203 aaKnown RBP RIP-Chip data0.79□□□□□ -2.28not detected
CDC39YCR093W IRC22P40006 225 aa0.79□□□□□ -2.28
CDC39YCR093W FCY21P40039 528 aa0.79□□□□□ -2.28
CDC39YCR093W NRK1P53915 240 aa0.79□□□□□ -2.28
CDC39YCR093W YDR249CQ03787 373 aa0.79□□□□□ -2.28
CDC39YCR093W FCF1Q05498 189 aaPredicted RBP0.79□□□□□ -2.28
CDC39YCR093W YMR030W-AQ3E760 96 aa0.79□□□□□ -2.28
CDC39YCR093W YLR156WP0CE96 114 aa0.79□□□□□ -2.28
CDC39YCR093W YLR159WP0CE97 114 aa0.79□□□□□ -2.28
CDC39YCR093W YLR161WP0CE98 114 aa0.79□□□□□ -2.28
CDC39YCR093W PAN3P36102 679 aaPredicted RBP0.79□□□□□ -2.28
CDC39YCR093W PGU1P47180 361 aa0.79□□□□□ -2.28
CDC39YCR093W EMI1Q04406 187 aa0.79□□□□□ -2.28
CDC39YCR093W UIP4Q08926 304 aa0.79□□□□□ -2.28
CDC39YCR093W VPS68Q12016 184 aa0.79□□□□□ -2.28
CDC39YCR093W HFA1P32874 2273 aa0.79□□□□□ -2.28
CDC39YCR093W GPA2P10823 449 aa0.79□□□□□ -2.28
CDC39YCR093W URA8P38627 578 aaPredicted RBP0.79□□□□□ -2.28
CDC39YCR093W RIO2P40160 425 aaKnown RBP0.79□□□□□ -2.28
CDC39YCR093W AGE2P40529 298 aa0.79□□□□□ -2.28
CDC39YCR093W SKI6P46948 246 aaPredicted RBP0.79□□□□□ -2.28
CDC39YCR093W EAF6P47128 113 aa0.79□□□□□ -2.28
CDC39YCR093W GRE1Q08969 168 aa0.79□□□□□ -2.28
CDC39YCR093W CDC33P07260 213 aaKnown RBP0.79□□□□□ -2.28
CDC39YCR093W RPS28BP0C0X0 67 aaKnown RBP0.79□□□□□ -2.28
CDC39YCR093W STP22P25604 385 aa0.79□□□□□ -2.28
CDC39YCR093W SRL3P36167 246 aa0.79□□□□□ -2.28
CDC39YCR093W TLG1Q03322 224 aa0.79□□□□□ -2.28
CDC39YCR093W YDL012CQ12489 107 aa0.79□□□□□ -2.28
CDC39YCR093W RPS28AQ3E7X9 67 aaPredicted RBP0.79□□□□□ -2.28
CDC39YCR093W RIF1P29539 1916 aa0.79□□□□□ -2.28
CDC39YCR093W TAH1P25638 111 aaPredicted RBP0.78□□□□□ -2.28
CDC39YCR093W MRPL17P36528 281 aa0.78□□□□□ -2.28
CDC39YCR093W CTR2P38865 189 aa0.78□□□□□ -2.28
CDC39YCR093W SWS2P53937 143 aa0.78□□□□□ -2.28
CDC39YCR093W DML1Q03652 475 aa0.78□□□□□ -2.28
CDC39YCR093W YBL112CQ3E7Y4 105 aa0.78□□□□□ -2.28
CDC39YCR093W ATG40Q99325 256 aa0.78□□□□□ -2.28
CDC39YCR093W NTF2P33331 125 aaKnown RBP0.78□□□□□ -2.28
Retrieved 100 of 5,963 RNA–protein pairs in 224.6 ms