RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 STRIP2Q9ULQ0 834 aa23.42■■□□□ 1.34
PNKP-220ENST00000627232 AGAP1Q9UPQ3 857 aa23.42■■□□□ 1.34
PNKP-220ENST00000627232 PDCD11Q14690 1871 aaKnown RBP23.41■■□□□ 1.34
PNKP-220ENST00000627232 TMEM191CA6NGB0 347 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 OPA1O60313 960 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 CILPO75339 1184 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 MYL3P08590 195 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 FGFR4P22455 802 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 PTGIRP43119 386 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 RAP1GAPP47736 663 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 SIX1Q15475 284 aaPredicted RBP23.41■■□□□ 1.34
PNKP-220ENST00000627232 DUPD1Q68J44 220 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 ERICH1Q86X53 443 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 ERP44Q9BS26 406 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 SMYD3Q9H7B4 428 aa23.41■■□□□ 1.34
PNKP-220ENST00000627232 TRIP11Q15643 1979 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 PODXLO00592 558 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 TNPO2O14787 897 aaKnown RBP23.4■■□□□ 1.34
PNKP-220ENST00000627232 DAPK3O43293 454 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 CD19P15391 556 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 FNTAP49354 379 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 DNAJC24Q6P3W2 148 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 RUFY4Q6ZNE9 571 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 JAMLQ86YT9 394 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 KATNAL2Q8IYT4 538 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 ZDHHC14Q8IZN3 488 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 SLC4A11Q8NBS3 891 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 LRRC45Q96CN5 670 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 KIF12Q96FN5 646 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 SH3GL2Q99962 352 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 FAN1Q9Y2M0 1017 aa23.4■■□□□ 1.34
PNKP-220ENST00000627232 ECM2O94769 699 aaPredicted RBP23.39■■□□□ 1.34
PNKP-220ENST00000627232 RARAP10276 462 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 GBP1P32455 592 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 COILP38432 576 aaPredicted RBP23.39■■□□□ 1.34
PNKP-220ENST00000627232 GUCY2FP51841 1108 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 CDH8P55286 799 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 PTPN11Q06124 597 aaPredicted RBP23.39■■□□□ 1.34
PNKP-220ENST00000627232 TMEM62Q0P6H9 643 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 INCA1Q0VD86 236 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 PPP1R15BQ5SWA1 713 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 DENND1BQ6P3S1 775 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 DDX42Q86XP3 938 aaKnown RBP eCLIP23.39■■□□□ 1.34
PNKP-220ENST00000627232 C3orf20Q8ND61 904 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 LENG1Q96BZ8 264 aaPredicted RBP23.39■■□□□ 1.34
PNKP-220ENST00000627232 TMEM176AQ96HP8 235 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 SNX27Q96L92 541 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 OSMRQ99650 979 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 LRRC19Q9H756 370 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 CDHR5Q9HBB8 845 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 PRDM10Q9NQV6 1147 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 VPS18Q9P253 973 aa23.39■■□□□ 1.34
PNKP-220ENST00000627232 PASKQ96RG2 1323 aa23.39■■□□□ 1.33
PNKP-220ENST00000627232 FAM155AB1AL88 458 aaPredicted RBP23.38■■□□□ 1.33
PNKP-220ENST00000627232 KPNA6O60684 536 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 RNF40O75150 1001 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 VDRP11473 427 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 YARSP54577 528 aaKnown RBP23.38■■□□□ 1.33
PNKP-220ENST00000627232 GSCP56915 257 aaPredicted RBP23.38■■□□□ 1.33
PNKP-220ENST00000627232 CFAP58Q5T655 872 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 CCDC137Q6PK04 289 aaKnown RBP23.38■■□□□ 1.33
PNKP-220ENST00000627232 IQCKQ8N0W5 287 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 NME8Q8N427 588 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 C18orf8Q96DM3 657 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 RUFY1Q96T51 708 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 TRIM51Q9BSJ1 452 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 ELOVL4Q9GZR5 314 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 BARX2Q9UMQ3 279 aaPredicted RBP23.38■■□□□ 1.33
PNKP-220ENST00000627232 TLL2Q9Y6L7 1015 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 TRIP12Q14669 1992 aaPredicted RBP23.38■■□□□ 1.33
PNKP-220ENST00000627232 GNAT1P11488 350 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 AKR1A1P14550 325 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 HOXC8P31273 242 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 MYO1EQ12965 1108 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 HIC1Q14526 733 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 FSCN1Q16658 493 aaKnown RBP23.38■■□□□ 1.33
PNKP-220ENST00000627232 DNAJB3Q8WWF6 145 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 SLCO2A1Q92959 643 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 EXOC4Q96A65 974 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 TSPAN18Q96SJ8 248 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 SNTG2Q9NY99 539 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 WDR35Q9P2L0 1181 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 KIAA1257Q9ULG3 409 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 GINS2Q9Y248 185 aa23.38■■□□□ 1.33
PNKP-220ENST00000627232 TCRBV7S2A1N4TA0A589 114 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 C17orf102A2RUQ5 167 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 GOLGA8KD6RF30 607 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 TAS2R40P59535 323 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 CRHR2Q13324 411 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 PIGHQ14442 188 aaPredicted RBP23.37■■□□□ 1.33
PNKP-220ENST00000627232 ZBTB6Q15916 424 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 LRRC38Q5VT99 294 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 TTC27Q6P3X3 843 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 GOLGA6L1Q8N7Z2 621 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 NIPA2Q8N8Q9 360 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 EXD1Q8NHP7 514 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 NEUROG2Q9H2A3 272 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 DPH5Q9H2P9 285 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 PSD3Q9NYI0 1048 aa23.37■■□□□ 1.33
PNKP-220ENST00000627232 ADAM21Q9UKJ8 722 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms