RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 LRRC55Q6ZSA7 311 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 CCDC149Q6ZUS6 474 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 TMEM57Q8N5G2 664 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 ENOX1Q8TC92 643 aaKnown RBP8.87□□□□□ -0.99
SMAD4-209ENST00000589941 NSUN6Q8TEA1 469 aaKnown RBP8.87□□□□□ -0.99
SMAD4-209ENST00000589941 DNAJB3Q8WWF6 145 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 NELL1Q92832 810 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 MAP4K1Q92918 833 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 SNX21Q969T3 373 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 TCTN2Q96GX1 697 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 RMDN3Q96TC7 470 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 PXMP2Q9NR77 195 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 LZTS1Q9Y250 596 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 PDCD11Q14690 1871 aaKnown RBP8.87□□□□□ -0.99
SMAD4-209ENST00000589941 KALRNO60229 2985 aa8.87□□□□□ -0.99
SMAD4-209ENST00000589941 B4DLN1 442 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 MRPL12P52815 198 aaKnown RBP8.86□□□□□ -0.99
SMAD4-209ENST00000589941 MRPS6P82932 125 aaKnown RBP8.86□□□□□ -0.99
SMAD4-209ENST00000589941 DAGLBQ8NCG7 672 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 KLHL6Q8WZ60 621 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 SECISBP2LQ93073 1101 aaKnown RBP8.86□□□□□ -0.99
SMAD4-209ENST00000589941 OSBP2Q969R2 916 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.86□□□□□ -0.99
SMAD4-209ENST00000589941 ZBTB40Q9NUA8 1239 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 CHMP5Q9NZZ3 219 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 SLAMF8Q9P0V8 285 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 GMEB2Q9UKD1 530 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 FBXO4Q9UKT5 387 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 PADI3Q9ULW8 664 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.86□□□□□ -0.99
SMAD4-209ENST00000589941 ZNF451Q9Y4E5 1061 aa8.86□□□□□ -0.99
SMAD4-209ENST00000589941 CELSR3Q9NYQ7 3312 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 MEIS1O00470 390 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 CBFA2T2O43439 604 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 LAMTOR5O43504 91 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 EIF3JO75822 258 aaKnown RBP8.85□□□□□ -0.99
SMAD4-209ENST00000589941 STAG3L1P0CL83 205 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 MYCLP12524 364 aaPredicted RBP8.85□□□□□ -0.99
SMAD4-209ENST00000589941 CA8P35219 290 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 SARSP49591 514 aaKnown RBP8.85□□□□□ -0.99
SMAD4-209ENST00000589941 SMC1AQ14683 1233 aaKnown RBP8.85□□□□□ -0.99
SMAD4-209ENST00000589941 GNPTABQ3T906 1256 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 ATAT1Q5SQI0 421 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 MARCH8Q5T0T0 291 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 ARHGEF16Q5VV41 709 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 GIMAP6Q6P9H5 292 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 DCLRE1AQ6PJP8 1040 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 OTOP3Q7RTS5 596 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 SLC44A3Q8N4M1 653 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 SLC22A17Q8WUG5 538 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 ATRIPQ8WXE1 791 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 ALPK1Q96QP1 1244 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 MYADMQ96S97 322 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 FAM49AQ9H0Q0 323 aaPredicted RBP8.85□□□□□ -0.99
SMAD4-209ENST00000589941 NGRNQ9NPE2 291 aaKnown RBP8.85□□□□□ -0.99
SMAD4-209ENST00000589941 CHST7Q9NS84 486 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 RXFP3Q9NSD7 469 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 SEMA4GQ9NTN9 838 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 ZSCAN32Q9NX65 697 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 SLC12A7Q9Y666 1083 aa8.85□□□□□ -0.99
SMAD4-209ENST00000589941 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.84□□□□□ -0.99
SMAD4-209ENST00000589941 GPAA1O43292 621 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 PDHBP11177 359 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 TDGF1P13385 188 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 LAG3P18627 525 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 CTSKP43235 329 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 NOVP48745 357 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 TEKQ02763 1124 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 WTAPQ15007 396 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 BBS9Q3SYG4 887 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 ANKRD39Q53RE8 183 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 UTP14CQ5TAP6 766 aaKnown RBP8.84□□□□□ -0.99
SMAD4-209ENST00000589941 MCTP1Q6DN14 999 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 KCNT2Q6UVM3 1135 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 GPR149Q86SP6 731 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 TMEM173Q86WV6 379 aaPredicted RBP8.84□□□□□ -0.99
SMAD4-209ENST00000589941 MRPL43Q8N983 215 aaKnown RBP8.84□□□□□ -0.99
SMAD4-209ENST00000589941 ARHGAP45Q92619 1136 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 BBC3Q96PG8 261 aaPredicted RBP8.84□□□□□ -0.99
SMAD4-209ENST00000589941 IWS1Q96ST2 819 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 GPR20Q99678 358 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 PDCD2LQ9BRP1 358 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 C22orf23Q9BZE7 217 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 FOXP3Q9BZS1 431 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 ADAMTS10Q9H324 1103 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 GP6Q9HCN6 339 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 IGSF9Q9P2J2 1179 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 TUBE1Q9UJT0 475 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 WASF3Q9UPY6 502 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 CTNND2Q9UQB3 1225 aa8.84□□□□□ -0.99
SMAD4-209ENST00000589941 CFAP46Q8IYW2 2715 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 IGSF9BQ9UPX0 1349 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 TSPY2A6NKD2 308 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 FOXP2O15409 715 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 GOLGA8HP0CJ92 632 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 CD247P20963 164 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 ZNF445P59923 1031 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 SLC7A5Q01650 507 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 SP4Q02446 784 aa8.83□□□□□ -1
SMAD4-209ENST00000589941 NUCB1Q02818 461 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms