RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 KIAA1586Q9HCI6 787 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 ZMYND8Q9ULU4 1186 aaPredicted RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 COL18A1P39060 1754 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 PHRF1Q9P1Y6 1649 aaKnown RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 PPP1R11O60927 126 aaPredicted RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 GSTA2P09210 222 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 WEE2P0C1S8 567 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 FOXN2P32314 431 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 PTGIRP43119 386 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 ROR2Q01974 943 aaKnown RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 DSG1Q02413 1049 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 CCDC14Q49A88 953 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 UBAP2Q5T6F2 1119 aaKnown RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 IRGCQ6NXR0 463 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 RSPH3Q86UC2 560 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 CDKL2Q92772 493 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 ATXN7L3BQ96GX2 97 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 PCDHB18PQ96TA0 734 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 COA1Q9GZY4 146 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 UNC45AQ9H3U1 944 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 ARHGEF3Q9NR81 526 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 SAE1Q9UBE0 346 aaPredicted RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 PIK3CDO00329 1044 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 AHCYL1O43865 530 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 RBP3P10745 1247 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 PYGBP11216 843 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 SEPT6Q14141 434 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 DLGAP5Q15398 846 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 MROH9Q5TGP6 573 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 OR6B2Q6IFH4 312 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 STARD13Q9Y3M8 1113 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 TAF1P21675 1872 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 ADCY3O60266 1144 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 SMNDC1O75940 238 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLN3-238ENST00000569430 PSMC1P62191 440 aaKnown RBP11.97□□□□□ -0.49
CLN3-238ENST00000569430 VSTM1Q6UX27 236 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 SV2AQ7L0J3 742 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 OTOAQ7RTW8 1153 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 MFN1Q8IWA4 741 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 MAP7D3Q8IWC1 876 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 NDUFAF2Q8N183 169 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 GALNT4Q8N4A0 578 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 NLRP7Q8WX94 980 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 INPP5DQ92835 1189 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 ATP6V0A1Q93050 837 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 ALKBH8Q96BT7 664 aaKnown RBP11.97□□□□□ -0.49
CLN3-238ENST00000569430 TMEM8AQ9HCN3 771 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 KCNMB3Q9NPA1 279 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 STXBP5LQ9Y2K9 1186 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 NWD2Q9ULI1 1742 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 C2orf71A6NGG8 1288 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 HLA-DRAP01903 254 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 SREBF1P36956 1147 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 STX3Q13277 289 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 CNGA3Q16281 694 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 KHDC1Q4VXA5 237 aaKnown RBP11.97□□□□□ -0.49
CLN3-238ENST00000569430 CYP4A22Q5TCH4 519 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 TNS2Q63HR2 1409 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 MFSD5Q6N075 450 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 ANO5Q75V66 913 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 THNSL1Q8IYQ7 743 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 GPD1LQ8N335 351 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 POU5F2Q8N7G0 328 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 E2F7Q96AV8 911 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 ANKRD27Q96NW4 1050 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 DDX4Q9NQI0 724 aaKnown RBP11.97□□□□□ -0.49
CLN3-238ENST00000569430 GABBR1Q9UBS5 961 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 CHKBQ9Y259 395 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 PSMG1O95456 288 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 GSTT1P30711 240 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 AQP5P55064 265 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 SOX10P56693 466 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 SEZ6Q53EL9 994 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 ARHGAP22Q7Z5H3 698 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 UCMAQ8WVF2 138 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 ZNF184Q99676 751 aaPredicted RBP11.97□□□□□ -0.49
CLN3-238ENST00000569430 FOXP3Q9BZS1 431 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 FHDC1Q9C0D6 1143 aaPredicted RBP11.97□□□□□ -0.49
CLN3-238ENST00000569430 LRRC19Q9H756 370 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 SIX2Q9NPC8 291 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 BCAP29Q9UHQ4 241 aa11.97□□□□□ -0.49
CLN3-238ENST00000569430 PRPSAP2O60256 369 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 PROSCO94903 275 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 HSPA4LO95757 839 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 CDH6P55285 790 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 ART3Q13508 389 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 MTMR2Q13614 643 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 PTK6Q13882 451 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 SLC1A5Q15758 541 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 MFSD7Q6UXD7 560 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 RAPH1Q70E73 1250 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 LDHDQ86WU2 507 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 LRRC43Q8N309 656 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 TTC13Q8NBP0 860 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 CCNYQ8ND76 341 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 FEZF2Q8TBJ5 459 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 SLC7A3Q8WY07 619 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 L3MBTL3Q96JM7 780 aaPredicted RBP11.96□□□□□ -0.49
CLN3-238ENST00000569430 FBXO28Q9NVF7 368 aa11.96□□□□□ -0.49
CLN3-238ENST00000569430 RBAKQ9NYW8 714 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms