RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ZNF512Q96ME7 567 aaPredicted RBP16.05■□□□□ 0.16
CLN3-213ENST00000565047 ASB16Q96NS5 453 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 PYM1Q9BRP8 204 aaKnown RBP16.05■□□□□ 0.16
CLN3-213ENST00000565047 MKNK1Q9BUB5 465 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 GZF1Q9H116 711 aaPredicted RBP16.05■□□□□ 0.16
CLN3-213ENST00000565047 TBC1D17Q9HA65 648 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 TRPV4Q9HBA0 871 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 HPSEQ9Y251 543 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 VPS13AQ96RL7 3174 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 PVALEFA0A1B0GWK0 134 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 ACTN4O43707 911 aaKnown RBP16.04■□□□□ 0.16
CLN3-213ENST00000565047 SOAT2O75908 522 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 ITGB3P05106 788 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 GLULP15104 373 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 GJA1P17302 382 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 POLR2BP30876 1174 aaKnown RBP16.04■□□□□ 0.16
CLN3-213ENST00000565047 ME1P48163 572 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 ASIC1P78348 528 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 TFAMQ00059 246 aaKnown RBP16.04■□□□□ 0.16
CLN3-213ENST00000565047 SV2CQ496J9 727 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 CYP4A22Q5TCH4 519 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 IQCEQ6IPM2 695 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 ARMCX5Q6P1M9 558 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 GAREM2Q75VX8 874 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 LRRC52Q8N7C0 313 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 DTWD2Q8NBA8 298 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 LEMD2Q8NC56 503 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 OR5B17Q8NGF7 314 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 PSMG2Q969U7 264 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 PKMYT1Q99640 499 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 BLZF1Q9H2G9 400 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 ZNF334Q9HCZ1 680 aaPredicted RBP16.04■□□□□ 0.16
CLN3-213ENST00000565047 AGPAT3Q9NRZ7 376 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 TMLHEQ9NVH6 421 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 GDAP2Q9NXN4 497 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 HSPBP1Q9NZL4 362 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 ITGA11Q9UKX5 1188 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 AGAP1Q9UPQ3 857 aa16.04■□□□□ 0.16
CLN3-213ENST00000565047 FAM237AA0A1B0GTK4 181 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 PROB1E7EW31 1015 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 SLFN14P0C7P3 912 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 ATF6P18850 670 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 PNPLA4P41247 253 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 SLC39A12Q504Y0 691 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 SLC44A4Q53GD3 710 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 DNAJB7Q7Z6W7 309 aaPredicted RBP16.03■□□□□ 0.16
CLN3-213ENST00000565047 GRAMD1CQ8IYS0 662 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 PDCL2Q8N4E4 241 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 LEO1Q8WVC0 666 aaPredicted RBP16.03■□□□□ 0.16
CLN3-213ENST00000565047 MTMR12Q9C0I1 747 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 IRF2BPLQ9H1B7 796 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 ASAH2Q9NR71 780 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 FAM86C1Q9NVL1 165 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 INTS13Q9NVM9 706 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 FAM13BQ9NYF5 915 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 SERTAD1Q9UHV2 236 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 L1RE1Q9UN81 338 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 ASB3Q9Y575 518 aa16.03■□□□□ 0.16
CLN3-213ENST00000565047 UBE4BO95155 1302 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 ZNF233A6NK53 670 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 GABRDO14764 452 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 CMA1P23946 247 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 EPHB3P54753 998 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 SMARCB1Q12824 385 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 SNW1Q13573 536 aaKnown RBP16.02■□□□□ 0.16
CLN3-213ENST00000565047 TEAD2Q15562 447 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 STXBP4Q6ZWJ1 553 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 C12orf56Q8IXR9 622 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 ZNF687Q8N1G0 1237 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 ELMOD1Q8N336 334 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 CSGALNACT2Q8N6G5 542 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 PJA1Q8NG27 643 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 CACTINQ8WUQ7 758 aaKnown RBP16.02■□□□□ 0.16
CLN3-213ENST00000565047 TMEM174Q8WUU8 243 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 SMARCD2Q92925 531 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 RSPRY1Q96DX4 576 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 PAGE5Q96GU1 130 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 ZNF560Q96MR9 790 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 IL21Q9HBE4 155 aa16.02■□□□□ 0.16
CLN3-213ENST00000565047 MTF2Q9Y483 593 aaPredicted RBP16.02■□□□□ 0.16
CLN3-213ENST00000565047 COL4A2P08572 1712 aa16.02■□□□□ 0.15
CLN3-213ENST00000565047 ARNTLO00327 626 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 HAPLN1P10915 354 aaPredicted RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 MYL4P12829 197 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 NBL1P41271 181 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 AFMP43652 599 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 ALDH1A3P47895 512 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 TUFMP49411 452 aaKnown RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 CDR1P51861 262 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 SNRPFP62306 86 aaKnown RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 RBP5P82980 135 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 PRKCQQ04759 706 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 PLD1Q13393 1074 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 FZD5Q13467 585 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 MLF2Q15773 248 aaPredicted RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 SOWAHAQ2M3V2 549 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 STXBP5Q5T5C0 1151 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 LMBRD2Q68DH5 695 aaPredicted RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 VITQ6UXI7 678 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 OSTM1Q86WC4 334 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms