RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 STARD13Q9Y3M8 1113 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 CSADQ9Y600 493 aa14.04□□□□□ -0.16
CLK3-206ENST00000562078 DDX39AO00148 427 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 IPO5O00410 1097 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 ALAS1P13196 640 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 HOXD13P35453 343 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 PTGIRP43119 386 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 SH3BGRP55822 239 aaPredicted RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 VGLL4Q14135 290 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 EDRF1Q3B7T1 1238 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 SLC44A4Q53GD3 710 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 CCDC92Q53HC0 331 aaPredicted RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 RINT1Q6NUQ1 792 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 KLC3Q6P597 504 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 ARHGEF18Q6ZSZ5 1173 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 EPM2AIP1Q7L775 607 aaPredicted RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 TRIM59Q8IWR1 403 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 NME8Q8N427 588 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 SIKE1Q9BRV8 207 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 CCDC28BQ9BUN5 200 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 RAVER2Q9HCJ3 691 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 OSGEPQ9NPF4 335 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 NKIRAS1Q9NYS0 192 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 ZFP69BQ9UJL9 534 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 PPP1R9AQ9ULJ8 1098 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 TMEM98Q9Y2Y6 226 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 SPDYE16A6NNV3 312 aaPredicted RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 SFI1A8K8P3 1242 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 GCNT3O95395 438 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 ASMTLO95671 621 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 IREB2P48200 963 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 HMGCS2P54868 508 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 DRG2P55039 364 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 STRN3Q13033 797 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 KNOP1Q1ED39 458 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 NOL9Q5SY16 702 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 PHLDB3Q6NSJ2 640 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 OLFML1Q6UWY5 402 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 PPP4R3CPQ6ZMV5 832 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 ZC3H3Q8IXZ2 948 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 CFAP61Q8NHU2 1237 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 CLEC4DQ8WXI8 215 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 WDR11Q9BZH6 1224 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 CDC42EP4Q9H3Q1 356 aaKnown RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 RPAP3Q9H6T3 665 aaPredicted RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 WRAP73Q9P2S5 460 aaPredicted RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 ZNF212Q9UDV6 495 aa14.03□□□□□ -0.16
CLK3-206ENST00000562078 TTC7AQ9ULT0 858 aaPredicted RBP14.03□□□□□ -0.16
CLK3-206ENST00000562078 PAPPA2Q9BXP8 1791 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 DDX3YO15523 660 aaKnown RBP14.02□□□□□ -0.16
CLK3-206ENST00000562078 ITGB5P18084 799 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 HOXD12P35452 270 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 MARSP56192 900 aaKnown RBP14.02□□□□□ -0.16
CLK3-206ENST00000562078 WDR4P57081 412 aaKnown RBP14.02□□□□□ -0.16
CLK3-206ENST00000562078 DSG1Q02413 1049 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 THOC5Q13769 683 aaKnown RBP14.02□□□□□ -0.16
CLK3-206ENST00000562078 DHX34Q14147 1143 aaKnown RBP14.02□□□□□ -0.16
CLK3-206ENST00000562078 MTDHQ86UE4 582 aaKnown RBP14.02□□□□□ -0.16
CLK3-206ENST00000562078 PDCD7Q8N8D1 485 aaKnown RBP14.02□□□□□ -0.16
CLK3-206ENST00000562078 SERPINB12Q96P63 405 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 RASAL2Q9UJF2 1139 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 ZNF180Q9UJW8 692 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 AMFRQ9UKV5 643 aa14.02□□□□□ -0.16
CLK3-206ENST00000562078 SOCS7O14512 581 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 GSC2O15499 205 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 HARSP12081 509 aaKnown RBP14.02□□□□□ -0.17
CLK3-206ENST00000562078 ACTN1P12814 892 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 AMPD1P23109 780 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 CD97P48960 835 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 IRF2BP2Q7Z5L9 587 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 TMEM110Q86TL2 294 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 C10orf82Q8WW14 230 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 ECSITQ9BQ95 431 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 MXRA8Q9BRK3 442 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 TEKT3Q9BXF9 490 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 PFDN4Q9NQP4 134 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 IL1RAPL1Q9NZN1 696 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 CTDP1Q9Y5B0 961 aaPredicted RBP14.02□□□□□ -0.17
CLK3-206ENST00000562078 SNCAIPQ9Y6H5 919 aa14.02□□□□□ -0.17
CLK3-206ENST00000562078 ASTN1O14525 1302 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 FAM13AO94988 1023 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 CETPP11597 493 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 CDK4P11802 303 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 ZFXP17010 805 aaPredicted RBP14.01□□□□□ -0.17
CLK3-206ENST00000562078 GSTM4Q03013 218 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 KCNA1Q09470 495 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 CTC1Q2NKJ3 1217 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 C10orf76Q5T2E6 689 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 TTC27Q6P3X3 843 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 LXNQ9BS40 222 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 EBF3Q9H4W6 596 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 SLC38A10Q9HBR0 1119 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 DNAJC17Q9NVM6 304 aaKnown RBP14.01□□□□□ -0.17
CLK3-206ENST00000562078 TMOD4Q9NZQ9 345 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 PCDHA3Q9Y5H8 950 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 PTPRFP10586 1907 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 FRMPD4Q14CM0 1322 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 C19orf81C9J6K1 198 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 ATP9BO43861 1147 aa14.01□□□□□ -0.17
CLK3-206ENST00000562078 ATP5DP30049 168 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms