RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 TLR9Q9NR96 1032 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 TESMINQ9Y4I5 508 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 WDFY4Q6ZS81 3184 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 FAM205AQ6ZU69 1335 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 GABRDO14764 452 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 TMEM127O75204 238 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 STARD3NLO95772 234 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 MT-CO1P00395 513 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 OSMP13725 252 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 PRMT2P55345 433 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 MRPS5P82675 430 aaKnown RBP7.38□□□□□ -1.23
RTF1-204ENST00000558117 CDSNQ15517 529 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 ABCB5Q2M3G0 1257 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 PLEKHO1Q53GL0 409 aaPredicted RBP7.38□□□□□ -1.23
RTF1-204ENST00000558117 OTUD7BQ6GQQ9 843 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 PGM2L1Q6PCE3 622 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 FAM111BQ6SJ93 734 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 ABHD15Q6UXT9 468 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 ANKRD35Q8N283 1001 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 SLC2A13Q96QE2 648 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 CRAMP1Q96RY5 1269 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 IFT122Q9HBG6 1241 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 HOMER2Q9NSB8 354 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 ATP6V0A2Q9Y487 856 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 C5orf42Q9H799 3197 aa7.38□□□□□ -1.23
RTF1-204ENST00000558117 ANKRD11Q6UB99 2663 aaPredicted RBP7.37□□□□□ -1.23
RTF1-204ENST00000558117 ABCC12Q96J65 1359 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 hCG_2014768A0A024R1R8 64 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 HIBADHP31937 336 aaKnown RBP7.37□□□□□ -1.23
RTF1-204ENST00000558117 MTNR1BP49286 362 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 BRDTQ58F21 947 aaPredicted RBP7.37□□□□□ -1.23
RTF1-204ENST00000558117 FKBP15Q5T1M5 1219 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 MFSD5Q6N075 450 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 MAMDC4Q6UXC1 1216 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 C1orf162Q8NEQ5 155 aaPredicted RBP7.37□□□□□ -1.23
RTF1-204ENST00000558117 DIS3LQ8TF46 1054 aaKnown RBP7.37□□□□□ -1.23
RTF1-204ENST00000558117 EPC1Q9H2F5 836 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 THEGQ9P2T0 379 aa7.37□□□□□ -1.23
RTF1-204ENST00000558117 RTL9Q8NET4 1388 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 PRAMEF4O60810 478 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 LTA4HP09960 611 aaKnown RBP7.36□□□□□ -1.23
RTF1-204ENST00000558117 MYBL2P10244 700 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 CAPN2P17655 700 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 ZNF280AP59817 542 aaPredicted RBP7.36□□□□□ -1.23
RTF1-204ENST00000558117 AMOTQ4VCS5 1084 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 Q6ZSN1 163 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 ARMC9Q7Z3E5 817 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 FAXDC2Q96IV6 333 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 ASPSCR1Q9BZE9 553 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 GIT1Q9Y2X7 761 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 SH3BP1Q9Y3L3 701 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 RIPOR2Q9Y4F9 1068 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 XIRP2A4UGR9 3374 aa7.36□□□□□ -1.23
RTF1-204ENST00000558117 TRANK1O15050 2925 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 TNKSO95271 1327 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 TRIM75PA6NK02 468 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 SMIM22K7EJ46 135 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCDHGA12O60330 932 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 TFRCP02786 760 aaKnown RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 MTHFD2P13995 350 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 CTSSP25774 331 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 MEF2AQ02078 507 aaPredicted RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 DUSP2Q05923 314 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 PRKG1Q13976 671 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCBP2Q15366 365 aaKnown RBP eCLIP7.35□□□□□ -1.23
RTF1-204ENST00000558117 ELAVL1Q15717 326 aaKnown RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 CLUL1Q15846 466 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 ADRM1Q16186 407 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 NRN1LQ496H8 165 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 SPRED1Q7Z699 444 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 GGNQ86UU5 652 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 GLB1L3Q8NCI6 653 aaPredicted RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 OR5M3Q8NGP4 307 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 RBM17Q96I25 401 aaKnown RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 CLMNQ96JQ2 1002 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 SRRDQ9UH36 339 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 NIP7Q9Y221 180 aaKnown RBP eCLIP7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCDHGA9Q9Y5G4 932 aaKnown RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCDHGA8Q9Y5G5 932 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCDHGA7Q9Y5G6 932 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCDHGA6Q9Y5G7 932 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCDHGA3Q9Y5H0 932 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 PCDHGA2Q9Y5H1 932 aa7.35□□□□□ -1.23
RTF1-204ENST00000558117 SETXQ7Z333 2677 aaKnown RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 COL3A1P02461 1466 aaPredicted RBP7.35□□□□□ -1.23
RTF1-204ENST00000558117 PPM1GO15355 546 aaPredicted RBP7.34□□□□□ -1.23
RTF1-204ENST00000558117 MFAP3LO75121 409 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 IPO13O94829 963 aaKnown RBP7.34□□□□□ -1.23
RTF1-204ENST00000558117 CFBP00751 764 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 A1BGP04217 495 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 AGXTP21549 392 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 ACRV1P26436 265 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 CTGFP29279 349 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 NF2P35240 595 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 CASRP41180 1078 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 WNT3AP56704 352 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 ANAPC15P60006 121 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 UBXN2AP68543 259 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 IGBP1P78318 339 aa7.34□□□□□ -1.23
RTF1-204ENST00000558117 USP39Q53GS9 565 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms