RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ME3Q16798 604 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 FSTL4Q6MZW2 842 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 ZNF280DQ6N043 979 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 TMC8Q8IU68 726 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 MCPH1Q8NEM0 835 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 DEFB124Q8NES8 71 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 TMX3Q96JJ7 454 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 TMEM209Q96SK2 561 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 NAP1L4Q99733 375 aaKnown RBP10.18□□□□□ -0.78
SYNE2-224ENST00000557024 MKNK1Q9BUB5 465 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 LRRC3Q9BY71 257 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 TMEM134Q9H6X4 195 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 PCDHA12Q9UN75 941 aa10.18□□□□□ -0.78
SYNE2-224ENST00000557024 ARID2Q68CP9 1835 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 TAF4O00268 1085 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 PFKFB2O60825 505 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 ATG13O75143 517 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 CDKL5O76039 1030 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 RHOBTB1O94844 696 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 VNN2O95498 520 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 PRAMEF12O95522 483 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 OR4Q2P0C623 313 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 CD46P15529 392 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 CSRP1P21291 193 aaKnown RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 YARSP54577 528 aaKnown RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 EVCP57679 992 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 OSTNP61366 133 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 GRSF1Q12849 480 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 ITPRIPL2Q3MIP1 535 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 TMEM196Q5HYL7 178 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 EARS2Q5JPH6 523 aaKnown RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 GPR158Q5T848 1215 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 NT5DC1Q5TFE4 455 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 ATF7IP2Q5U623 682 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 FAM177A1Q8N128 213 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 CEP120Q8N960 986 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 NECAB1Q8N987 351 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 C18orf25Q96B23 403 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 SUSD3Q96L08 255 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 ZMAT2Q96NC0 199 aaKnown RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 PGLYRP2Q96PD5 576 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 DNAJC25Q9H1X3 360 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 CRISPLD1Q9H336 500 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 ATXN3LQ9H3M9 355 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 TMEM9BQ9NQ34 198 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 TOPORSQ9NS56 1045 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 GJB4Q9NTQ9 266 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 SLC38A7Q9NVC3 462 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 KLK13Q9UKR3 277 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 MAFFQ9ULX9 164 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 INVSQ9Y283 1065 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-224ENST00000557024 RALGAPA1Q6GYQ0 2036 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 WDFY3Q8IZQ1 3526 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 GREB1Q4ZG55 1949 aa10.17□□□□□ -0.78
SYNE2-224ENST00000557024 PATE3B3GLJ2 98 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 KHNYNO15037 678 aaKnown RBP10.16□□□□□ -0.78
SYNE2-224ENST00000557024 DTNBO60941 627 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 RNF40O75150 1001 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 ZIC2O95409 532 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-224ENST00000557024 LARGE1O95461 756 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 EGFP01133 1207 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 GBP1P32455 592 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 MCM4P33991 863 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 GRM5P41594 1212 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 NAMPTP43490 491 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 EPHB3P54753 998 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 SCRN1Q12765 414 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 DUSP4Q13115 394 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 PLD1Q13393 1074 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 CALCRLQ16602 461 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 UAP1L1Q3KQV9 507 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 DMRTA1Q5VZB9 504 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 GAREM2Q75VX8 874 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 CAMKK1Q8N5S9 505 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 APPL2Q8NEU8 664 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 BEST2Q8NFU1 509 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 BPIFB1Q8TDL5 484 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 SPIRE2Q8WWL2 714 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 GTF3C6Q969F1 213 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 CCDC94Q9BW85 323 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-224ENST00000557024 SMG9Q9H0W8 520 aaKnown RBP10.16□□□□□ -0.78
SYNE2-224ENST00000557024 TTC12Q9H892 705 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-224ENST00000557024 POLD4Q9HCU8 107 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 SMC3Q9UQE7 1217 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 NEUROG3Q9Y4Z2 214 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 FREM2Q5SZK8 3169 aa10.16□□□□□ -0.78
SYNE2-224ENST00000557024 CDX4O14627 284 aaPredicted RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 SOAT2O75908 522 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 XRCC6P12956 609 aaKnown RBP eCLIP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 GABRR2P28476 465 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 MARCKSP29966 332 aaPredicted RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 RPL9P32969 192 aaKnown RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 TXKP42681 527 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 ALDH1A3P47895 512 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 EFNA5P52803 228 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 CYP4F8P98187 520 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 KARSQ15046 597 aaKnown RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 PTPAQ15257 358 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 ARHGAP15Q53QZ3 475 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms