RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PLVAPQ9BX97 442 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 SMYD3Q9H7B4 428 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 SNTG2Q9NY99 539 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 CILPO75339 1184 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 MAN1A1P33908 653 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 PSMC4P43686 418 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 ZNF200P98182 395 aaPredicted RBP27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 C1orf131Q8NDD1 294 aaKnown RBP27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 WHAMMQ8TF30 809 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 EIF2AQ9BY44 585 aaKnown RBP27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 SAGE1Q9NXZ1 904 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 CITO14578 2027 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 PYGMP11217 842 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 CDH8P55286 799 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 C2CD6Q53TS8 623 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 LLGL2Q6P1M3 1020 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 PHLDB2Q86SQ0 1253 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 CASKIN2Q8WXE0 1202 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 MTG1Q9BT17 334 aaPredicted RBP27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 TRIM7Q9C029 511 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 UPF3AQ9H1J1 476 aaKnown RBP27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 SLTMQ9NWH9 1034 aaKnown RBP eCLIP27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 RNF186Q9NXI6 227 aa27.97■■■□□ 2.07
CCDC88C-205ENST00000553403 CARSP49589 748 aaKnown RBP27.96■■■□□ 2.07
CCDC88C-205ENST00000553403 GUCY2FP51841 1108 aa27.96■■■□□ 2.07
CCDC88C-205ENST00000553403 SLC4A11Q8NBS3 891 aa27.96■■■□□ 2.07
CCDC88C-205ENST00000553403 GADD45GIP1Q8TAE8 222 aaPredicted RBP27.96■■■□□ 2.07
CCDC88C-205ENST00000553403 TSPAN18Q96SJ8 248 aa27.96■■■□□ 2.07
CCDC88C-205ENST00000553403 CD19P15391 556 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 NKX3-2P78367 333 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 TAP1Q03518 808 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 MYO1EQ12965 1108 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 CUL1Q13616 776 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 ZBTB6Q15916 424 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 TAF2Q6P1X5 1199 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 ALKAL1Q6UXT8 129 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 SND1Q7KZF4 910 aaKnown RBP eCLIP27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 TMEM130Q8N3G9 435 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 WDTC1Q8N5D0 677 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 TMEM176AQ96HP8 235 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 CNTN3Q9P232 1028 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 HPCAL4Q9UM19 191 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 SBDSQ9Y3A5 250 aaKnown RBP eCLIP27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 NR2E1Q9Y466 385 aa27.95■■■□□ 2.07
CCDC88C-205ENST00000553403 TCRBV5S1A1TA0A578 114 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 ZSCAN5CA6NGD5 496 aaPredicted RBP27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 C6orf222P0C671 652 aaPredicted RBP27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 PTPN11Q06124 597 aaPredicted RBP27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 INCA1Q0VD86 236 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 AADACL2Q6P093 401 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 DENND1BQ6P3S1 775 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 ERICH1Q86X53 443 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 SLC13A5Q86YT5 568 aaPredicted RBP27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 BEST2Q8NFU1 509 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 TRIB2Q92519 343 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 TRIM6Q9C030 488 aaPredicted RBP27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 ELOVL4Q9GZR5 314 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 IP6K2Q9UHH9 426 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 AMACRQ9UHK6 382 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 MYADML2A6NDP7 307 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 TLR3O15455 904 aaKnown RBP27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 PHF2O75151 1096 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 TMEM40Q8WWA1 233 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 IFT81Q8WYA0 676 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 ARHGAP39Q9C0H5 1083 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 MTUS1Q9ULD2 1270 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 STRIP2Q9ULQ0 834 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 BARX2Q9UMQ3 279 aaPredicted RBP27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 GABRQQ9UN88 632 aa27.94■■■□□ 2.06
CCDC88C-205ENST00000553403 FAM187AA6NFU0 413 aa27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 PSTPIP1O43586 416 aa27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 VDRP11473 427 aa27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 DHX34Q14147 1143 aaKnown RBP27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 DNAJC24Q6P3W2 148 aa27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 SPC25Q9HBM1 224 aa27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 KIAA1257Q9ULG3 409 aa27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 NFU1Q9UMS0 254 aa27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 PIN4Q9Y237 131 aaKnown RBP27.93■■■□□ 2.06
CCDC88C-205ENST00000553403 ESYT3A0FGR9 886 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 TMEM191CA6NGB0 347 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 CHRNA3P32297 505 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 AARSP49588 968 aaKnown RBP eCLIP27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 FLT3LGP49771 235 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 CYP1B1Q16678 543 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 GNASQ5JWF2 1037 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 LRRC52Q8N7C0 313 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 SEC14L1Q92503 715 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 ZMAT2Q96NC0 199 aaKnown RBP27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 RUNDC3BQ96NL0 473 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 TWNKQ96RR1 684 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 ERVK-5Q9HDB9 667 aa27.92■■■□□ 2.06
CCDC88C-205ENST00000553403 RECQL4O94761 1208 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 OAS2P29728 719 aaKnown RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 RHOT1Q8IXI2 618 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 PRELID2Q8N945 189 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 MAIP1Q8WWC4 291 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 DDX27Q96GQ7 796 aaKnown RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 PLEKHA4Q9H4M7 779 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 FSCN2O14926 492 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 TTI1O43156 1089 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms