RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SNX9Q9Y5X1 595 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 MTCL1Q9Y4B5 1905 aaKnown RBP10.24□□□□□ -0.77
LIMA1-211ENST00000552338 LRRC53A6NM62 1247 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 TLL1O43897 1013 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 TADA2AO75478 443 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 C1RP00736 705 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 SOD2P04179 222 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 ODC1P11926 461 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 BMPR1AP36894 532 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 BRCC3P46736 316 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 RAD23BP54727 409 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 ADKP55263 362 aaKnown RBP10.23□□□□□ -0.77
LIMA1-211ENST00000552338 UBE3AQ05086 875 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 LRMPQ12912 555 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 ASTE1Q2TB18 679 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-211ENST00000552338 HS1BP3Q53T59 392 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 SFMBT2Q5VUG0 894 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 FUT10Q6P4F1 479 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 FAM171BQ6P995 826 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 CCDC186Q7Z3E2 898 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 TMCO2Q7Z6W1 182 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-211ENST00000552338 PDCL2Q8N4E4 241 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 OLIG1Q8TAK6 271 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 DDX1Q92499 740 aaKnown RBP10.23□□□□□ -0.77
LIMA1-211ENST00000552338 RNPC3Q96LT9 517 aaKnown RBP10.23□□□□□ -0.77
LIMA1-211ENST00000552338 PKMYT1Q99640 499 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 ARID3AQ99856 593 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 GPR62Q9BZJ7 368 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 UBE2OQ9C0C9 1292 aaKnown RBP10.23□□□□□ -0.77
LIMA1-211ENST00000552338 SPG21Q9NZD8 308 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 NXF1Q9UBU9 619 aaKnown RBP10.23□□□□□ -0.77
LIMA1-211ENST00000552338 PCDHGC3Q9UN70 934 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 NME7Q9Y5B8 376 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 IRAK3Q9Y616 596 aa10.23□□□□□ -0.77
LIMA1-211ENST00000552338 SF3B1O75533 1304 aaKnown RBP eCLIP10.23□□□□□ -0.773e-6■■■■■ 137.9
LIMA1-211ENST00000552338 LINC01553A4QN01 128 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 LILRB3O75022 631 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 LCA5LO95447 670 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 SERPING1P05155 500 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 WEE2P0C1S8 567 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 CDH5P33151 784 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-211ENST00000552338 GNL1P36915 607 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-211ENST00000552338 CDH8P55286 799 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 ERVK-21P61565 698 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 PTK2Q05397 1052 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 SMARCB1Q12824 385 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 RAPGEF1Q13905 1077 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 STILQ15468 1287 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 CNGA2Q16280 664 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 PAN2Q504Q3 1202 aaKnown RBP10.22□□□□□ -0.77
LIMA1-211ENST00000552338 WSCD1Q658N2 575 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 E4F1Q66K89 784 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-211ENST00000552338 ARHGAP17Q68EM7 881 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 DSTYKQ6XUX3 929 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 TMEM173Q86WV6 379 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-211ENST00000552338 TMTC1Q8IUR5 882 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 ADGRF2Q8IZF7 708 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 TDHQ8IZJ6 230 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 SLC4A11Q8NBS3 891 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 CCDC112Q8NEF3 446 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 SLC30A5Q8TAD4 765 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 PIK3R5Q8WYR1 880 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 TMEM176AQ96HP8 235 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 RTP3Q9BQQ7 232 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 MRPL45Q9BRJ2 306 aaKnown RBP10.22□□□□□ -0.77
LIMA1-211ENST00000552338 ZBED2Q9BTP6 218 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 HERC2P3Q9BVR0 1158 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 NT5C1AQ9BXI3 368 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 SMYD3Q9H7B4 428 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 PCDH10Q9P2E7 1040 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 HCSTQ9UBK5 93 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 CACNG4Q9UBN1 327 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 CDH9Q9ULB4 789 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 NENFQ9UMX5 172 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 PCDHB12Q9Y5F1 795 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 BACE2Q9Y5Z0 518 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 ATP8B3O60423 1300 aa10.22□□□□□ -0.77
LIMA1-211ENST00000552338 MYH10P35580 1976 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 CEP290O15078 2479 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 F8W810 466 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 VDRP11473 427 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 PCSK1P29120 753 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 NDST1P52848 882 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 SMAD3P84022 425 aaKnown RBP10.21□□□□□ -0.77
LIMA1-211ENST00000552338 DSG1Q02413 1049 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 YWHAHQ04917 246 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-211ENST00000552338 BMS1Q14692 1282 aaKnown RBP10.21□□□□□ -0.77
LIMA1-211ENST00000552338 RAB30Q15771 203 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 ARHGAP44Q17R89 818 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 TSR1Q2NL82 804 aaKnown RBP10.21□□□□□ -0.77
LIMA1-211ENST00000552338 USP41Q3LFD5 358 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 PKDCCQ504Y2 493 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 KIAA0319Q5VV43 1072 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 SLC8B1Q6J4K2 584 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 TMEM270Q6UE05 265 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 ANKS3Q6ZW76 656 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 OSTM1Q86WC4 334 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 METTL23Q86XA0 190 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 CCDC170Q8IYT3 715 aa10.21□□□□□ -0.77
LIMA1-211ENST00000552338 SPC24Q8NBT2 197 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms