RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MLLT6P55198 1093 aaPredicted RBP11.5□□□□□ -0.57
VPS29-208ENST00000550267 MRPL58Q14197 206 aaKnown RBP11.5□□□□□ -0.57
VPS29-208ENST00000550267 TUSC1Q2TAM9 212 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 CTXN3Q4LDR2 81 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 STPG1Q5TH74 334 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 ATF7IP2Q5U623 682 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 TPGS2Q68CL5 300 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 MEIOBQ8N635 442 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 CEP120Q8N960 986 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 SHKBP1Q8TBC3 707 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 C1QTNF2Q9BXJ5 285 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 SMOC1Q9H4F8 434 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 SLITRK6Q9H5Y7 841 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 C8orf33Q9H7E9 229 aaPredicted RBP11.5□□□□□ -0.57
VPS29-208ENST00000550267 POLD4Q9HCU8 107 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 ASAH2Q9NR71 780 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 SH2B1Q9NRF2 756 aaPredicted RBP11.5□□□□□ -0.57
VPS29-208ENST00000550267 MYBPHLA2RUH7 354 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 SYN3O14994 580 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 CHADO15335 359 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 MED24O75448 989 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 CDKL5O76039 1030 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 EPN2O95208 641 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 KCNK5O95279 499 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 ZNF806P0C7X5 589 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 KRT2P35908 639 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 PXNP49023 591 aaPredicted RBP11.49□□□□□ -0.57
VPS29-208ENST00000550267 OSTNP61366 133 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 SCRN1Q12765 414 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 PON2Q15165 354 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 DGKKQ5KSL6 1271 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 CATSPER3Q86XQ3 398 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 LINC00528Q8N1L1 170 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 LEMD2Q8NC56 503 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 TNFRSF25Q93038 417 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 ZMAT2Q96NC0 199 aaKnown RBP11.49□□□□□ -0.57
VPS29-208ENST00000550267 AFF4Q9UHB7 1163 aaKnown RBP11.49□□□□□ -0.57
VPS29-208ENST00000550267 MAP4K5Q9Y4K4 846 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 CYP46A1Q9Y6A2 500 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 STK36Q9NRP7 1315 aa11.49□□□□□ -0.57
VPS29-208ENST00000550267 A0A1W2PRU2 124 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 C1QTNF9BB2RNN3 333 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 EXTL3O43909 919 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 NEMFO60524 1076 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 C1QTNF9P0C862 333 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 CPB1P15086 417 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 CYP11B2P19099 503 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 HOXA6P31267 233 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 YARSP54577 528 aaKnown RBP11.48□□□□□ -0.57
VPS29-208ENST00000550267 FCHO2Q0JRZ9 810 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 XKR4Q5GH76 650 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 STXBP5Q5T5C0 1151 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 ZNF280DQ6N043 979 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 C1orf228Q6PIY5 440 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 ALKAL1Q6UXT8 129 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 KBTBD6Q86V97 674 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 FAM200AQ8TCP9 573 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 GAB3Q8WWW8 586 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 E2F7Q96AV8 911 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 C18orf25Q96B23 403 aaPredicted RBP11.48□□□□□ -0.57
VPS29-208ENST00000550267 ZFYVE19Q96K21 471 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 LRRC3BQ96PB8 259 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 MTMR9Q96QG7 549 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 NACC1Q96RE7 527 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 CCDC94Q9BW85 323 aaPredicted RBP11.48□□□□□ -0.57
VPS29-208ENST00000550267 LRRC3Q9BY71 257 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 GPR88Q9GZN0 384 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 CDT1Q9H211 546 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 TUFT1Q9NNX1 390 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 TOPORSQ9NS56 1045 aaPredicted RBP11.48□□□□□ -0.57
VPS29-208ENST00000550267 GTSE1Q9NYZ3 720 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 YIPF1Q9Y548 306 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 NUB1Q9Y5A7 615 aa11.48□□□□□ -0.57
VPS29-208ENST00000550267 CHD8Q9HCK8 2581 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 ARHGEF35A5YM69 484 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 RPP40O75818 363 aaKnown RBP11.47□□□□□ -0.57
VPS29-208ENST00000550267 CTDNEP1O95476 244 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 RAP1GAPP47736 663 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 CCINQ13939 588 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 PPP2R5AQ15172 486 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 PSAPL1Q6NUJ1 521 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 PKN3Q6P5Z2 889 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 CACNA2D4Q7Z3S7 1137 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 RALGPS2Q86X27 583 aaPredicted RBP11.47□□□□□ -0.57
VPS29-208ENST00000550267 TMC8Q8IU68 726 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 ARID3BQ8IVW6 561 aaPredicted RBP11.47□□□□□ -0.57
VPS29-208ENST00000550267 LOXL4Q96JB6 756 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 SUSD3Q96L08 255 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 LSM14BQ9BX40 385 aaKnown RBP11.47□□□□□ -0.57
VPS29-208ENST00000550267 TMEM60Q9H2L4 133 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 PDRG1Q9NUG6 133 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 SLC38A7Q9NVC3 462 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 ZMIZ1Q9ULJ6 1067 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 TNFSF13BQ9Y275 285 aa11.47□□□□□ -0.57
VPS29-208ENST00000550267 PDCD11Q14690 1871 aaKnown RBP11.46□□□□□ -0.57
VPS29-208ENST00000550267 VNN2O95498 520 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 OR4Q2P0C623 313 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 CCDC192P0DO97 292 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 MCM4P33991 863 aa11.46□□□□□ -0.57
VPS29-208ENST00000550267 EFNA5P52803 228 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms