RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SCOCQ9UIL1 159 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 AGTPBP1Q9UPW5 1226 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 C2CD2LO14523 706 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 ZBED4O75132 1171 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 DSG3P32926 999 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 PHBP35232 272 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 MAMLD1Q13495 774 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 ENOSF1Q7L5Y1 443 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 RHPN2Q8IUC4 686 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 TCP10LQ8TDR4 215 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 UCMAQ8WVF2 138 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 RBM41Q96IZ5 413 aaKnown RBP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 ARL8BQ9NVJ2 186 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 EURLQ9NYK6 297 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 COQ4Q9Y3A0 265 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 CLRN2A0PK11 232 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 AP1G2O75843 785 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 TCF4P15884 667 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 CPA2P48052 419 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 GEMIN4P57678 1058 aaKnown RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 C4orf50Q6ZRC1 276 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 C3orf62Q6ZUJ4 267 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 LRRC6Q86X45 466 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 GPD1LQ8N335 351 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 CADM1Q9BY67 442 aaKnown RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 MANSC1Q9H8J5 431 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 GINM1Q9NU53 330 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 TMOD2Q9NZR1 351 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 ZWINTO95229 277 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 HLA-DRAP01903 254 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 FGFR1P11362 822 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 PSMC4P43686 418 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 PAPOLAP51003 745 aaKnown RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 GCNT1Q02742 428 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 EAPPQ56P03 285 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 TMEM161BQ8NDZ6 487 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 TMC2Q8TDI7 906 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 SPIRE2Q8WWL2 714 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 SCG3Q8WXD2 468 aaKnown RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 CEP170P1Q96L14 293 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 TSSK1BQ9BXA7 367 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 FBXO6Q9NRD1 293 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 SCINQ9Y6U3 715 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 UMODL1Q5DID0 1318 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 TESPA1A2RU30 521 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 PMM2O15305 246 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 MT-ND3P03897 115 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 ACADSP16219 412 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 SERPINB3P29508 390 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 RPL7AP62424 266 aaKnown RBP11.86□□□□□ -0.51
SYNE1-237ENST00000539504 PODNQ7Z5L7 613 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 RELL1Q8IUW5 271 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 RCOR2Q8IZ40 523 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 FEZF2Q8TBJ5 459 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 NSL1Q96IY1 281 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 MIPEPQ99797 713 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 BTBD10Q9BSF8 475 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 SLC17A7Q9P2U7 560 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 IVNS1ABPQ9Y6Y0 642 aa11.86□□□□□ -0.51
SYNE1-237ENST00000539504 ATRNL1Q5VV63 1379 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 SMCHD1A6NHR9 2005 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 NFIBO00712 420 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 HARSP12081 509 aaKnown RBP11.85□□□□□ -0.51
SYNE1-237ENST00000539504 SNRPFP62306 86 aaKnown RBP11.85□□□□□ -0.51
SYNE1-237ENST00000539504 MORF4L2Q15014 288 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 TKFCQ3LXA3 575 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 PLEKHG4Q58EX7 1191 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 RNF220Q5VTB9 566 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 NLRX1Q86UT6 975 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 TDRPQ86YL5 185 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 ENDOVQ8N8Q3 282 aaKnown RBP11.85□□□□□ -0.51
SYNE1-237ENST00000539504 PAFAH2Q99487 392 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 IQCGQ9H095 443 aaKnown RBP11.85□□□□□ -0.51
SYNE1-237ENST00000539504 SAR1AQ9NR31 198 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 SAE1Q9UBE0 346 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-237ENST00000539504 SLC24A2Q9UI40 661 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 C2orf71A6NGG8 1288 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 ATP9AO75110 1047 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 ACOT2P49753 483 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 LIG4P49917 911 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 SYCP2LQ5T4T6 812 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 MON1BQ7L1V2 547 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 MAP4K3Q8IVH8 894 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 SENP7Q9BQF6 1050 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 PIDD1Q9HB75 910 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 C2CD2Q9Y426 696 aa11.85□□□□□ -0.51
SYNE1-237ENST00000539504 CTDP1Q9Y5B0 961 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-237ENST00000539504 ALOX15BO15296 676 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 SNUPNO95149 360 aaKnown RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 NCKAP1LP55160 1127 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ARL4CP56559 192 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 PSMC5P62195 406 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 B3GNT9Q6UX72 402 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 RGS9BPQ6ZS82 235 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ZNF677Q86XU0 584 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ALLCQ8N6M5 410 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ATP11CQ8NB49 1132 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 MCEEQ96PE7 176 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 AGO4Q9HCK5 861 aaKnown RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 PARVAQ9NVD7 372 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms