RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, human

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-205	ENST00000538828	VRTN	Q9H8Y1	702 aa		13.25	□□□□□ -0.29
CLTCL1-205	ENST00000538828	KCNK12	Q9HB15	430 aa		13.25	□□□□□ -0.29
CLTCL1-205	ENST00000538828	RMND1	Q9NWS8	449 aa		13.25	□□□□□ -0.29
CLTCL1-205	ENST00000538828	DNMT3B	Q9UBC3	853 aa	Known RBP	13.25	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SIX4	Q9UIU6	781 aa		13.25	□□□□□ -0.29
CLTCL1-205	ENST00000538828	DUSP12	Q9UNI6	340 aa		13.25	□□□□□ -0.29
CLTCL1-205	ENST00000538828	AGAP1	Q9UPQ3	857 aa		13.25	□□□□□ -0.29
CLTCL1-205	ENST00000538828	MTMR11	A4FU01	709 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TMEM221	A6NGB7	291 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828		M0R296	226 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	GABRD	O14764	452 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	IKBKB	O14920	756 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CLIC2	O15247	247 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CCL16	O15467	120 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CALU	O43852	315 aa	Predicted RBP	13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	EXOC3	O60645	756 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SEC24A	O95486	1093 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	FGF19	O95750	216 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	RHO	P08100	348 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SNW1	Q13573	536 aa	Known RBP	13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	NFE2	Q16621	373 aa	Predicted RBP	13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TRAPPC11	Q7Z392	1133 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	FEZF2	Q8TBJ5	459 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TMC2	Q8TDI7	906 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	FGF13	Q92913	245 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CEP295NL	Q96MC4	621 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ZNF512	Q96ME7	567 aa	Predicted RBP	13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	MTMR12	Q9C0I1	747 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	GPR88	Q9GZN0	384 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	GDPD2	Q9HCC8	539 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ABCB6	Q9NP58	842 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ZMYM5	Q9UJ78	669 aa		13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.24	□□□□□ -0.29
CLTCL1-205	ENST00000538828	VNN2	O95498	520 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	RPL13	P26373	211 aa	Known RBP	13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PCSK1	P29120	753 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ALDH1A3	P47895	512 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CYP2J2	P51589	502 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ARPP19	P56211	112 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	MYL7	Q01449	175 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TSPY1	Q01534	308 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	HTR4	Q13639	388 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	EDRF1	Q3B7T1	1238 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PRSS36	Q5K4E3	855 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	WSCD1	Q658N2	575 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PDCL2	Q8N4E4	241 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	OR5B17	Q8NGF7	314 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	OR10T2	Q8NGX3	314 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PARD3B	Q8TEW8	1205 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	HPDL	Q96IR7	371 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PRRX2	Q99811	253 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	RTP3	Q9BQQ7	232 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	WNT16	Q9UBV4	365 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	MRPS23	Q9Y3D9	190 aa	Known RBP	13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	YIPF1	Q9Y548	306 aa		13.23	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PTPRJ	Q12913	1337 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SOBP	A7XYQ1	873 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TACC1	O75410	805 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SMC2	O95347	1197 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	NR3C1	P04150	777 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TNNI1	P19237	187 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SP100	P23497	879 aa	Predicted RBP	13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PPP1R2	P41236	205 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	EPHB3	P54753	998 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	TWF1	Q12792	350 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	MAPRE1	Q15691	268 aa	Known RBP	13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ZCWPW2	Q504Y3	356 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CYP4A22	Q5TCH4	519 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	FOXR2	Q6PJQ5	311 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	GET4	Q7L5D6	327 aa	Predicted RBP	13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ITIH5	Q86UX2	942 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	NPAS3	Q8IXF0	933 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SLC44A3	Q8N4M1	653 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PSMG2	Q969U7	264 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SYAP1	Q96A49	352 aa	Predicted RBP	13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	FUBP3	Q96I24	572 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	MKNK1	Q9BUB5	465 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	GZF1	Q9H116	711 aa	Predicted RBP	13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ASAH2	Q9NR71	780 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SLC2A4RG	Q9NR83	387 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CHMP5	Q9NZZ3	219 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	L1RE1	Q9UN81	338 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	POLI	Q9UNA4	740 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	FRMD4B	Q9Y2L6	1034 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	HCN4	Q9Y3Q4	1203 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SNX9	Q9Y5X1	595 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	MUC6	Q6W4X9	2439 aa		13.22	□□□□□ -0.29
CLTCL1-205	ENST00000538828	CACNA1H	O95180	2353 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ECI2	O75521	394 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	ASGR2	P07307	311 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	KRT19	P08727	400 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	PRR29	P0C7W0	189 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	DLAT	P10515	647 aa	Known RBP	13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	SRF	P11831	508 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	COL9A1	P20849	921 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	WARS	P23381	471 aa	Known RBP	13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	WEE1	P30291	646 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	BFSP1	Q12934	665 aa		13.21	□□□□□ -0.29
CLTCL1-205	ENST00000538828	DUSP4	Q13115	394 aa		13.21	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms