RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 DERAQ9Y315 318 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 SNX24Q9Y343 169 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 C2CD2Q9Y426 696 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 NR2E1Q9Y466 385 aa7.03□□□□□ -1.28
USP28-206ENST00000538224 GRIN2DO15399 1336 aa7.02□□□□□ -1.28
USP28-206ENST00000538224 TMEM191CA6NGB0 347 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 GLTPD2A6NH11 291 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 RRN3P2A6NIE6 340 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 PDHXO00330 501 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 EBAG9O00559 213 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 NDUFAB1O14561 156 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 KRT1P04264 644 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 KRT7P08729 469 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 WEE2P0C1S8 567 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 CXCL8P10145 99 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 VDRP11473 427 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 INSRRP14616 1297 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 CD58P19256 250 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 ADORA2AP29274 412 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 MDH1P40925 334 aaKnown RBP7.02□□□□□ -1.29
USP28-206ENST00000538224 SSR1P43307 286 aaKnown RBP7.02□□□□□ -1.29
USP28-206ENST00000538224 ASPAP45381 313 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 CLCN3P51790 818 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 SNX16P57768 344 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 KLF1Q13351 362 aaPredicted RBP7.02□□□□□ -1.29
USP28-206ENST00000538224 TMEM132DQ14C87 1099 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 TRADDQ15628 312 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 HADHQ16836 314 aaKnown RBP7.02□□□□□ -1.29
USP28-206ENST00000538224 FAM110CQ1W6H9 321 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 Q3C1V9 767 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 KCTD16Q68DU8 428 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 TAPT1Q6NXT6 567 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 AADACL2Q6P093 401 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 ZDHHC24Q6UX98 284 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 THNSL1Q8IYQ7 743 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 SH2D3CQ8N5H7 860 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 LINC01465Q8N7H1 131 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 TTC13Q8NBP0 860 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 BCAS4Q8TDM0 211 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 TLCD1Q96CP7 247 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 CCDC114Q96M63 670 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 SCLT1Q96NL6 688 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 TSPAN18Q96SJ8 248 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 PHACTR1Q9C0D0 580 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 XYLT2Q9H1B5 865 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 EPN3Q9H201 632 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 CENPHQ9H3R5 247 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 ABHD16BQ9H3Z7 469 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 PDZD7Q9H5P4 517 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 PLEKHA5Q9HAU0 1116 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 PTPN22Q9Y2R2 807 aa7.02□□□□□ -1.29
USP28-206ENST00000538224 CCL15-CCL14A0A0B4J2E2 113 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 TCRBV5S1A1TA0A578 114 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 SLC15A5A6NIM6 579 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 TTLL13PA6NNM8 815 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 H3BRB1 525 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 SMAPO00193 183 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 RGS16O15492 202 aaPredicted RBP7.01□□□□□ -1.29
USP28-206ENST00000538224 RIPK2O43353 540 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 PEX10O60683 326 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 CST3P01034 146 aaPredicted RBP7.01□□□□□ -1.29
USP28-206ENST00000538224 HMGCRP04035 888 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 KRT19P08727 400 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 STAG3L1P0CL83 205 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 SETSIPP0DME0 302 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 RALAP11233 206 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 CD19P15391 556 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 HPDP32754 393 aaPredicted RBP7.01□□□□□ -1.29
USP28-206ENST00000538224 LSP1P33241 339 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 FLT3P36888 993 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 GRM5P41594 1212 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 RBP5P82980 135 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 PTPN11Q06124 597 aaPredicted RBP7.01□□□□□ -1.29
USP28-206ENST00000538224 INCA1Q0VD86 236 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 MYO1EQ12965 1108 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 NFX1Q12986 1120 aaKnown RBP7.01□□□□□ -1.29
USP28-206ENST00000538224 PDCLQ13371 301 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 GRB14Q14449 540 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 ZNF268Q14587 947 aaPredicted RBP7.01□□□□□ -1.29
USP28-206ENST00000538224 PTGISQ16647 500 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 CCL15Q16663 113 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 AMHR2Q16671 573 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 DGKDQ16760 1214 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 DUSP28Q4G0W2 176 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 SEZ6Q53EL9 994 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 EAPPQ56P03 285 aaPredicted RBP7.01□□□□□ -1.29
USP28-206ENST00000538224 TFDP3Q5H9I0 405 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 PPP1R15BQ5SWA1 713 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 ZFYVE27Q5T4F4 411 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 EEF1DP3Q658K8 133 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 IQSEC1Q6DN90 963 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 MFSD5Q6N075 450 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 MTHFD1LQ6UB35 978 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 SCARA5Q6ZMJ2 495 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 MOB2Q70IA6 237 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 PLEKHH3Q7Z736 793 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 SRLQ86TD4 932 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 DPP9Q86TI2 863 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 RELL1Q8IUW5 271 aa7.01□□□□□ -1.29
USP28-206ENST00000538224 RIBC1Q8N443 379 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms