RNA–Protein interactions for RNA: ENST00000521037.1

VPS13B-208, Transcript of vacuolar protein sorting 13 homolog B, human

TSL 5

Gene VPS13B, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13B-208	ENST00000521037	CPT1A	P50416	773 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	GATM	P50440	423 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	OAZ1	P54368	228 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	ATP8B2	P98198	1209 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	CALD1	Q05682	793 aa	Known RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	FAM160A1	Q05DH4	1040 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	KLRC3	Q07444	240 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	APOBR	Q0VD83	1088 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	MVP	Q14764	893 aa	Known RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	PLEKHG6	Q3KR16	790 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	LARP1B	Q659C4	914 aa	Known RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	DIEXF	Q68CQ4	756 aa	Known RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	OVOS1	Q6IE37	1185 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	ATF7IP	Q6VMQ6	1270 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	RASGRP2	Q7LDG7	609 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	HOMER1	Q86YM7	354 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	SLITRK4	Q8IW52	837 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	CPXCR1	Q8N123	301 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	PRPF38A	Q8NAV1	312 aa	Known RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	OR6J1	Q8NGC5	347 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	AFG1L	Q8WV93	481 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	CPLX3	Q8WVH0	158 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	SORCS2	Q96PQ0	1159 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	DDX23	Q9BUQ8	820 aa	Known RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	CDADC1	Q9BWV3	514 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	SSBP3	Q9BWW4	388 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	SLC12A9	Q9BXP2	914 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	IFIH1	Q9BYX4	1025 aa	Known RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	RNF38	Q9H0F5	515 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	BRMS1	Q9HCU9	246 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	GPR108	Q9NPR9	543 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	TMEM260	Q9NX78	707 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	GFOD1	Q9NXC2	390 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	SMPD4	Q9NXE4	827 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	LRP2BP	Q9P2M1	347 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	MTF2	Q9Y483	593 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	PCDHB14	Q9Y5E9	798 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	ZNF462	Q96JM2	2506 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	SHOX	O15266	292 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	KPNA6	O60684	536 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CHRNA1	P02708	482 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CHGB	P05060	677 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	TEC	P42680	631 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	ALDH5A1	P51649	535 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CHMP4BP1	P59074	171 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	PRR5	P85299	388 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	DMWD	Q09019	674 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	MGAT3	Q09327	533 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	IFRD2	Q12894	506 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	MTX1	Q13505	466 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	DDR2	Q16832	855 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	SNAP47	Q5SQN1	464 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CPZ	Q66K79	652 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CERS3	Q8IU89	383 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CARF	Q8N187	725 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	C12orf76	Q8N812	135 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	OR6P1	Q8NGX9	317 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	RSAD2	Q8WXG1	361 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CLEC4D	Q8WXI8	215 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	DDX1	Q92499	740 aa	Known RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	ANAPC16	Q96DE5	110 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	NEK1	Q96PY6	1258 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CRBN	Q96SW2	442 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	TLE6	Q9H808	572 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	ACAD9	Q9H845	621 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	RNF146	Q9NTX7	359 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	DDX56	Q9NY93	547 aa	Known RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	UBP1	Q9NZI7	540 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	WNT16	Q9UBV4	365 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	FBXO40	Q9UH90	709 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	PMF1-BGLAP	U3KQ54	211 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	TTC3	P53804	2025 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	MGA	Q8IWI9	3026 aa		4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	CNOT1	A5YKK6	2376 aa	Known RBP	4.53	□□□□□ -1.68
VPS13B-208	ENST00000521037	ZBED9	Q6R2W3	1325 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	RSPH10B2	B2RC85	870 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	MPHOSPH10	O00566	681 aa	Known RBP	4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	SMAD7	O15105	426 aa	Known RBP	4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	PRKAB2	O43741	272 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	CLEC3A	O75596	197 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	KRT38	O76015	456 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	RSPH10B	P0C881	870 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	ZNF20	P17024	532 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	HOXC13	P31276	330 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	CNR2	P34972	360 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	MC3R	P41968	323 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	SNAP25	P60880	206 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	AMPD3	Q01432	767 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	TDG	Q13569	410 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	AUH	Q13825	339 aa	Known RBP	4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	WTAP	Q15007	396 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	RALBP1	Q15311	655 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	CCDC184	Q52MB2	194 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	C12orf60	Q5U649	245 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	CRTC3	Q6UUV7	619 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	SLC30A10	Q6XR72	485 aa		4.52	□□□□□ -1.69
VPS13B-208	ENST00000521037	C16orf86	Q6ZW13	317 aa		4.52	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms