RNA–Protein interactions for RNA: ENST00000521037.1

VPS13B-208, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-208ENST00000521037 AEBP2Q6ZN18 517 aaPredicted RBP21.22■□□□□ 0.99
VPS13B-208ENST00000521037 CHIC1Q5VXU3 224 aa19.93■□□□□ 0.78
VPS13B-208ENST00000521037 SENP3Q9H4L4 574 aaPredicted RBP18■□□□□ 0.47
VPS13B-208ENST00000521037 PHF23Q9BUL5 403 aaPredicted RBP17.8■□□□□ 0.44
VPS13B-208ENST00000521037 FOXD1Q16676 465 aa16.88■□□□□ 0.29
VPS13B-208ENST00000521037 PLPPR3Q6T4P5 718 aa15.78■□□□□ 0.12
VPS13B-208ENST00000521037 MSH5O43196 834 aa15.77■□□□□ 0.12
VPS13B-208ENST00000521037 POTEDQ86YR6 584 aa15.75■□□□□ 0.11
VPS13B-208ENST00000521037 PPP6R1Q9UPN7 881 aa15.7■□□□□ 0.1
VPS13B-208ENST00000521037 PIAS4Q8N2W9 510 aaPredicted RBP15.62■□□□□ 0.09
VPS13B-208ENST00000521037 ADRA2BP18089 450 aa15.57■□□□□ 0.08
VPS13B-208ENST00000521037 MAPK8IP2Q13387 824 aaPredicted RBP14.39□□□□□ -0.11
VPS13B-208ENST00000521037 DMRT2Q9Y5R5 561 aa14.3□□□□□ -0.12
VPS13B-208ENST00000521037 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.14
VPS13B-208ENST00000521037 PPP4R3CPQ6ZMV5 832 aa13.84□□□□□ -0.19
VPS13B-208ENST00000521037 HOXD11P31277 338 aaPredicted RBP13.75□□□□□ -0.21
VPS13B-208ENST00000521037 CACNB1Q02641 598 aaPredicted RBP13.61□□□□□ -0.23
VPS13B-208ENST00000521037 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
VPS13B-208ENST00000521037 DCAF8L1A6NGE4 600 aa13.55□□□□□ -0.24
VPS13B-208ENST00000521037 RNF216Q9NWF9 866 aaPredicted RBP13.55□□□□□ -0.24
VPS13B-208ENST00000521037 RNF39Q9H2S5 420 aa13.52□□□□□ -0.25
VPS13B-208ENST00000521037 DNAJC5BQ9UF47 199 aa13.32□□□□□ -0.28
VPS13B-208ENST00000521037 C1QBPQ07021 282 aaKnown RBP13.27□□□□□ -0.29
VPS13B-208ENST00000521037 NCBP3Q53F19 620 aaKnown RBP13.17□□□□□ -0.3
VPS13B-208ENST00000521037 NPM3O75607 178 aaKnown RBP13.08□□□□□ -0.32
VPS13B-208ENST00000521037 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.95□□□□□ -0.34
VPS13B-208ENST00000521037 U3KPZ7 1027 aaPredicted RBP12.77□□□□□ -0.37
VPS13B-208ENST00000521037 KCNA4P22459 653 aa12.68□□□□□ -0.38
VPS13B-208ENST00000521037 SPINK5Q9NQ38 1064 aaPredicted RBP12.63□□□□□ -0.39
VPS13B-208ENST00000521037 SLC4A2P04920 1241 aa12.6□□□□□ -0.39
VPS13B-208ENST00000521037 DSG3P32926 999 aa12.59□□□□□ -0.39
VPS13B-208ENST00000521037 CAPN15O75808 1086 aa12.5□□□□□ -0.41
VPS13B-208ENST00000521037 TRHP20396 242 aaPredicted RBP12.27□□□□□ -0.45
VPS13B-208ENST00000521037 POTEHQ6S545 545 aa12.27□□□□□ -0.45
VPS13B-208ENST00000521037 ZNF219Q9P2Y4 722 aaPredicted RBP12.26□□□□□ -0.45
VPS13B-208ENST00000521037 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.23□□□□□ -0.45
VPS13B-208ENST00000521037 ABCB7O75027 752 aa12.23□□□□□ -0.45
VPS13B-208ENST00000521037 APLP2Q06481 763 aa12.23□□□□□ -0.45
VPS13B-208ENST00000521037 HNRNPUL2Q1KMD3 747 aaKnown RBP12.23□□□□□ -0.45
VPS13B-208ENST00000521037 SAMD1Q6SPF0 538 aaPredicted RBP12.18□□□□□ -0.46
VPS13B-208ENST00000521037 MYCNP04198 464 aaPredicted RBP12.03□□□□□ -0.48
VPS13B-208ENST00000521037 POLA2Q14181 598 aa11.97□□□□□ -0.49
VPS13B-208ENST00000521037 RBM42Q9BTD8 480 aaKnown RBP11.91□□□□□ -0.5
VPS13B-208ENST00000521037 ATF5Q9Y2D1 282 aaPredicted RBP11.88□□□□□ -0.51
VPS13B-208ENST00000521037 SLC4A1APQ9BWU0 796 aaKnown RBP11.87□□□□□ -0.51
VPS13B-208ENST00000521037 FOXD4L1Q9NU39 408 aa11.84□□□□□ -0.51
VPS13B-208ENST00000521037 CHRDL2Q6WN34 429 aa11.77□□□□□ -0.53
VPS13B-208ENST00000521037 ZBTB22O15209 634 aa11.71□□□□□ -0.53
VPS13B-208ENST00000521037 AKT1S1Q96B36 256 aa11.66□□□□□ -0.54
VPS13B-208ENST00000521037 ZBTB12Q9Y330 459 aaPredicted RBP11.63□□□□□ -0.55
VPS13B-208ENST00000521037 REM2Q8IYK8 340 aaPredicted RBP11.57□□□□□ -0.56
VPS13B-208ENST00000521037 OSCARQ8IYS5 282 aa11.56□□□□□ -0.56
VPS13B-208ENST00000521037 ATXN8OSP0DMR3 200 aa11.52□□□□□ -0.57
VPS13B-208ENST00000521037 PIP4P2Q8N4L2 257 aa11.49□□□□□ -0.57
VPS13B-208ENST00000521037 PITPNM1O00562 1244 aa11.44□□□□□ -0.58
VPS13B-208ENST00000521037 FXR2P51116 673 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS13B-208ENST00000521037 SP7Q8TDD2 431 aaPredicted RBP11.42□□□□□ -0.58
VPS13B-208ENST00000521037 MKRN4PQ13434 485 aaPredicted RBP11.33□□□□□ -0.6
VPS13B-208ENST00000521037 SPDYE2BA6NHP3 402 aa11.31□□□□□ -0.6
VPS13B-208ENST00000521037 SPDYE6P0CI01 402 aa11.31□□□□□ -0.6
VPS13B-208ENST00000521037 SPDYE2Q495Y8 402 aa11.31□□□□□ -0.6
VPS13B-208ENST00000521037 FBLN2P98095 1184 aa11.26□□□□□ -0.61
VPS13B-208ENST00000521037 HAX1O00165 279 aa11.25□□□□□ -0.61
VPS13B-208ENST00000521037 EVX2Q03828 476 aa11.25□□□□□ -0.61
VPS13B-208ENST00000521037 SSUH2Q9Y2M2 353 aa11.21□□□□□ -0.61
VPS13B-208ENST00000521037 ZNF692Q9BU19 519 aaPredicted RBP11.14□□□□□ -0.63
VPS13B-208ENST00000521037 SPDYE1Q8NFV5 336 aaPredicted RBP11.13□□□□□ -0.63
VPS13B-208ENST00000521037 PRKAR2AP13861 404 aaKnown RBP11.11□□□□□ -0.63
VPS13B-208ENST00000521037 CLEC11AQ9Y240 323 aa11.08□□□□□ -0.64
VPS13B-208ENST00000521037 C19orf67A6NJJ6 358 aa11.05□□□□□ -0.64
VPS13B-208ENST00000521037 CSRNP3Q8WYN3 585 aa11□□□□□ -0.65
VPS13B-208ENST00000521037 PABPN1Q86U42 306 aaKnown RBP eCLIP10.98□□□□□ -0.65
VPS13B-208ENST00000521037 CHADLQ6NUI6 762 aa10.97□□□□□ -0.65
VPS13B-208ENST00000521037 GABBR2O75899 941 aa10.92□□□□□ -0.66
VPS13B-208ENST00000521037 PRR29P0C7W0 189 aa10.91□□□□□ -0.66
VPS13B-208ENST00000521037 FARP1Q9Y4F1 1045 aaPredicted RBP10.8□□□□□ -0.68
VPS13B-208ENST00000521037 POTEIP0CG38 1075 aa10.76□□□□□ -0.69
VPS13B-208ENST00000521037 CD44P16070 742 aaKnown RBP10.73□□□□□ -0.69
VPS13B-208ENST00000521037 LHX8Q68G74 356 aa10.7□□□□□ -0.7
VPS13B-208ENST00000521037 CREBZFQ9NS37 354 aa10.69□□□□□ -0.7
VPS13B-208ENST00000521037 CLCN6P51797 869 aa10.64□□□□□ -0.71
VPS13B-208ENST00000521037 SPDYE4A6NLX3 237 aa10.61□□□□□ -0.71
VPS13B-208ENST00000521037 ZNF579Q8NAF0 562 aaKnown RBP10.61□□□□□ -0.71
VPS13B-208ENST00000521037 EHMT2Q96KQ7 1210 aa10.61□□□□□ -0.71
VPS13B-208ENST00000521037 STAG3Q9UJ98 1225 aa10.61□□□□□ -0.71
VPS13B-208ENST00000521037 ZRANB1Q9UGI0 708 aa10.55□□□□□ -0.72
VPS13B-208ENST00000521037 MNX1P50219 401 aaPredicted RBP10.54□□□□□ -0.72
VPS13B-208ENST00000521037 GALR2O43603 387 aaPredicted RBP10.49□□□□□ -0.73
VPS13B-208ENST00000521037 DCBLD2Q96PD2 775 aa10.48□□□□□ -0.73
VPS13B-208ENST00000521037 NISCHQ9Y2I1 1504 aa10.48□□□□□ -0.73
VPS13B-208ENST00000521037 PROM2Q8N271 834 aa10.45□□□□□ -0.74
VPS13B-208ENST00000521037 PHF12Q96QT6 1004 aa10.42□□□□□ -0.74
VPS13B-208ENST00000521037 POTEB2H3BUK9 544 aa10.4□□□□□ -0.74
VPS13B-208ENST00000521037 NPM1P06748 294 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS13B-208ENST00000521037 PELP1Q8IZL8 1130 aaKnown RBP10.37□□□□□ -0.75
VPS13B-208ENST00000521037 OTUD5Q96G74 571 aa10.35□□□□□ -0.75
VPS13B-208ENST00000521037 PAK3O75914 559 aaPredicted RBP10.34□□□□□ -0.75
VPS13B-208ENST00000521037 ASTLQ6HA08 431 aaPredicted RBP10.29□□□□□ -0.76
VPS13B-208ENST00000521037 MS4A3Q96HJ5 214 aa10.28□□□□□ -0.76
VPS13B-208ENST00000521037 ATMINO43313 823 aaPredicted RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms