RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TARSP26639 723 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 EIF2B5Q13144 721 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 NAB2Q15742 525 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 DDR2Q16832 855 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 SPDYCQ5MJ68 293 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CACHD1Q5VU97 1274 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 PID1Q7Z2X4 250 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 ULK2Q8IYT8 1036 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 GRPEL2Q8TAA5 225 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CAPSLQ8WWF8 208 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 MNTQ99583 582 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 WDR12Q9GZL7 423 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 TMA7Q9Y2S6 64 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 GDAQ9Y2T3 454 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 STARD13Q9Y3M8 1113 aa11.7□□□□□ -0.54
LIMCH1-217ENST00000512946 UBA6A0AVT1 1052 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 TLR2O60603 784 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 SOAT2O75908 522 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 RARGP13631 454 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CDH3P22223 829 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 IL13P35225 146 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 VAMP7P51809 220 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 SPIRE1Q08AE8 756 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 NECTIN1Q15223 517 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 TSNQ15631 228 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 KCNT1Q5JUK3 1230 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 RNF219Q5W0B1 726 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 TMC4Q7Z404 712 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 SUN5Q8TC36 379 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 NGLY1Q96IV0 654 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 GORASP1Q9BQQ3 440 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 PLEKHG1Q9ULL1 1385 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 NEMP1O14524 444 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CD3EAPO15446 510 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 TMEM253P0C7T8 217 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CCND2P30279 289 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 NNMTP40261 264 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 FAM83EQ2M2I3 478 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 SIX5Q8N196 739 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 RAD54LQ92698 747 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CAVIN3Q969G5 261 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 BORCS5Q969J3 196 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 STK33Q9BYT3 514 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 DHX36Q9H2U1 1008 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 TIMMDC1Q9NPL8 285 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 COMMD9Q9P000 198 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CNOT7Q9UIV1 285 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 PCDHB8Q9UN66 801 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 ARHGEF10O15013 1369 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 F8W810 466 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 PDXKO00764 312 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CLOCKO15516 846 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 GSTT1P30711 240 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 NCALDP61601 193 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CDO1Q16878 200 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 BICRALQ6AI39 1079 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 LIN54Q6MZP7 749 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CDC73Q6P1J9 531 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 DPP8Q6V1X1 898 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 PPIL6Q8IXY8 311 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 C4orf33Q8N1A6 199 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 LRRC17Q8N6Y2 441 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 KBTBD8Q8NFY9 601 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 C1orf54Q8WWF1 131 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 C2orf40Q9H1Z8 148 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 DYRK4Q9NR20 520 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 COMMD8Q9NX08 183 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 FARP1Q9Y4F1 1045 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 KIF14Q15058 1648 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 SYNCRIPO60506 623 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 PCCAP05165 728 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 USP11P51784 963 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CTSWP56202 376 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CCNA1P78396 465 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 LRRC74AQ0VAA2 488 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CHI3L2Q15782 390 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 TRAPPC3LQ5T215 181 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 RBM20Q5T481 1227 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 LRRC74BQ6ZQY2 392 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 ERO1BQ86YB8 467 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 DDX50Q9BQ39 737 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 RPRD1BQ9NQG5 326 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 NDFIP2Q9NV92 336 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 RRN3Q9NYV6 651 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 DBR1Q9UK59 544 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 GSTK1Q9Y2Q3 226 aa11.69□□□□□ -0.54
LIMCH1-217ENST00000512946 CYP2D7A0A087X1C5 515 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 MATN2O00339 956 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GDF11O95390 407 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 MLNP12872 115 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GYS1P13807 737 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ALOX12P18054 663 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GNA15P30679 374 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 STIP1P31948 543 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CDH6P55285 790 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 RPS8P62241 208 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ZNF846Q147U1 533 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 C5orf22Q49AR2 442 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 FAM98BQ52LJ0 330 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms